Variant report

Variant	rs559731582
Chromosome Location	chr3:121384325-121384326
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:121374281..121376977-chr3:121381116..121385045,3	MCF-7	breast:
2	chr3:121378883..121381780-chr3:121382077..121384890,2	K562	blood:

Variant related genes	Relation type
ENSG00000222057	Chromatin interaction
ENSG00000180353	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591395	chr3:120970900-121501070	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv591396	chr3:120970900-121557533	Strong transcription Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv591397	chr3:120977383-121505882	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv999335	chr3:121100283-121408766	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv998740	chr3:121289499-121390271	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv432480	chr3:121355723-121629928	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
7	nsv432482	chr3:121364236-121629634	Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
8	nsv432481	chr3:121364236-121637178	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
9	nsv829703	chr3:121383290-121534493	Flanking Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:121378000-121388400	Strong transcription	Fetal Stomach	stomach
2	chr3:121379400-121384600	Weak transcription	Fetal Kidney	kidney
3	chr3:121379400-121402400	Strong transcription	Fetal Intestine Large	intestine
4	chr3:121380000-121402600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:121380200-121385200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr3:121380200-121386200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr3:121380200-121397000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:121380400-121384600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr3:121380400-121385400	Weak transcription	K562	blood
10	chr3:121380400-121386800	Strong transcription	Brain Anterior Caudate	brain
11	chr3:121380400-121396400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr3:121380400-121396800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr3:121380400-121402400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr3:121380400-121402800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr3:121380400-121406600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr3:121380600-121384600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr3:121380600-121384800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr3:121380600-121384800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr3:121380600-121413800	Weak transcription	Stomach Mucosa	stomach
20	chr3:121380800-121385000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr3:121380800-121386600	Strong transcription	HSMM	muscle
22	chr3:121380800-121389600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr3:121381000-121388200	Strong transcription	Fetal Intestine Small	intestine
24	chr3:121381000-121391400	Strong transcription	GM12878-XiMat	blood
25	chr3:121381000-121401800	Strong transcription	Primary T helper cells fromperipheralblood	blood
26	chr3:121381000-121403200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr3:121381400-121388400	Strong transcription	Gastric	stomach
28	chr3:121381400-121389000	Strong transcription	Thymus	Thymus
29	chr3:121381400-121389800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr3:121381400-121406800	Strong transcription	Duodenum Mucosa	Duodenum
31	chr3:121381600-121384600	Strong transcription	Fetal Lung	lung
32	chr3:121381600-121385000	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr3:121381600-121385400	Strong transcription	Primary monocytes fromperipheralblood	blood
34	chr3:121381600-121385600	Strong transcription	Colonic Mucosa	Colon
35	chr3:121381600-121386800	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr3:121381600-121386800	Strong transcription	Brain Inferior Temporal Lobe	brain
37	chr3:121381600-121387000	Strong transcription	Cortex derived primary cultured neurospheres	brain
38	chr3:121381600-121387200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr3:121381600-121387200	Strong transcription	Brain Germinal Matrix	brain
40	chr3:121381600-121387400	Strong transcription	Brain Hippocampus Middle	brain
41	chr3:121381600-121388200	Strong transcription	Lung	lung
42	chr3:121381600-121388400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr3:121381600-121388600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr3:121381600-121388800	Strong transcription	Primary hematopoietic stem cells	blood
45	chr3:121381600-121389000	Strong transcription	Fetal Brain Female	brain
46	chr3:121381600-121389200	Strong transcription	Muscle Satellite Cultured Cells	--
47	chr3:121381600-121389200	Strong transcription	Duodenum Smooth Muscle	Duodenum
48	chr3:121381600-121389400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
49	chr3:121381600-121389600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr3:121381600-121391800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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