Variant report

Variant	rs55978045
Chromosome Location	chr2:72451525-72451526
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs57194904	1.00[AMR][1000 genomes]
rs57897982	1.00[AMR][1000 genomes]
rs58912718	1.00[AMR][1000 genomes]
rs60460654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73942533	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73942551	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73942553	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73942559	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73942564	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73942569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73942574	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73943321	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv963919	chr2:72372956-72830387	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72432800-72456600	Weak transcription	Psoas Muscle	Psoas
2	chr2:72433000-72460600	Weak transcription	Pancreas	Pancrea
3	chr2:72433200-72466000	Weak transcription	Right Ventricle	heart
4	chr2:72433200-72468600	Weak transcription	Right Atrium	heart
5	chr2:72441000-72462800	Weak transcription	Left Ventricle	heart
6	chr2:72447800-72456400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr2:72447800-72457000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr2:72450000-72451600	Enhancers	Brain Cingulate Gyrus	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links