Variant report

Variant	rs73942559
Chromosome Location	chr2:72432213-72432214
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:72431398..72433535-chr2:72436487..72438674,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs55978045	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60460654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73942533	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73942551	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73942553	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73942564	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73942569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73942574	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73943321	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv963919	chr2:72372956-72830387	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72426800-72437600	Weak transcription	NH-A	brain
2	chr2:72429000-72433200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr2:72429200-72433600	Enhancers	Fetal Intestine Large	intestine
4	chr2:72429400-72433000	Enhancers	Fetal Lung	lung
5	chr2:72429800-72433200	Enhancers	Right Ventricle	heart
6	chr2:72430000-72433200	Enhancers	Ovary	ovary
7	chr2:72430200-72433400	Enhancers	Brain Substantia Nigra	brain
8	chr2:72430400-72433200	Enhancers	Colon Smooth Muscle	Colon
9	chr2:72430400-72433600	Enhancers	Fetal Stomach	stomach
10	chr2:72430600-72433400	Enhancers	Brain Anterior Caudate	brain
11	chr2:72430800-72432800	Enhancers	Liver	Liver
12	chr2:72430800-72432800	Enhancers	Colonic Mucosa	Colon
13	chr2:72430800-72432800	Enhancers	Esophagus	oesophagus
14	chr2:72430800-72433000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr2:72430800-72433000	Enhancers	Pancreas	Pancrea
16	chr2:72430800-72433200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr2:72430800-72433200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr2:72430800-72433200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr2:72430800-72433200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr2:72430800-72433200	Enhancers	Fetal Kidney	kidney
21	chr2:72430800-72433200	Enhancers	Fetal Muscle Leg	muscle
22	chr2:72430800-72433200	Enhancers	Right Atrium	heart
23	chr2:72430800-72433200	Enhancers	Stomach Mucosa	stomach
24	chr2:72430800-72433400	Enhancers	Fetal Intestine Small	intestine
25	chr2:72430800-72433600	Enhancers	Duodenum Mucosa	Duodenum
26	chr2:72430800-72433600	Enhancers	Small Intestine	intestine
27	chr2:72431000-72432800	Enhancers	Gastric	stomach
28	chr2:72431000-72432800	Enhancers	Stomach Smooth Muscle	stomach
29	chr2:72431000-72433000	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr2:72431000-72433200	Enhancers	Duodenum Smooth Muscle	Duodenum
31	chr2:72431000-72433200	Enhancers	Left Ventricle	heart
32	chr2:72431000-72433600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr2:72431200-72432600	Enhancers	Primary hematopoietic stem cells	blood
34	chr2:72431200-72432800	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr2:72431200-72433200	Enhancers	Adipose Nuclei	Adipose
36	chr2:72431200-72433200	Enhancers	Brain Angular Gyrus	brain
37	chr2:72431200-72433400	Enhancers	Fetal Heart	heart
38	chr2:72431200-72433400	Enhancers	Sigmoid Colon	Sigmoid Colon
39	chr2:72431400-72432400	Flanking Active TSS	HepG2	liver
40	chr2:72431400-72432600	Weak transcription	Placenta	Placenta
41	chr2:72431400-72433200	Enhancers	Brain Cingulate Gyrus	brain
42	chr2:72431400-72433200	Enhancers	Brain Inferior Temporal Lobe	brain
43	chr2:72431400-72433200	Enhancers	Lung	lung
44	chr2:72431400-72433800	Enhancers	Brain Hippocampus Middle	brain
45	chr2:72431600-72432600	Weak transcription	Fetal Muscle Trunk	muscle
46	chr2:72431800-72432400	Enhancers	Primary monocytes fromperipheralblood	blood
47	chr2:72431800-72432600	Weak transcription	Psoas Muscle	Psoas
48	chr2:72431800-72432800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr2:72432000-72432400	Enhancers	HSMM	muscle
50	chr2:72432000-72432800	Enhancers	Muscle Satellite Cultured Cells	--

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