Variant report

Variant	rs73943321
Chromosome Location	chr2:72518954-72518955
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs55978045	1.00[AMR][1000 genomes]
rs57194904	1.00[AMR][1000 genomes]
rs57897982	1.00[AMR][1000 genomes]
rs58912718	1.00[AMR][1000 genomes]
rs60460654	1.00[AMR][1000 genomes]
rs73942533	1.00[AMR][1000 genomes]
rs73942551	1.00[AMR][1000 genomes]
rs73942553	1.00[AMR][1000 genomes]
rs73942559	1.00[AMR][1000 genomes]
rs73942564	1.00[AMR][1000 genomes]
rs73942569	1.00[AMR][1000 genomes]
rs73942574	1.00[AMR][1000 genomes]
rs73943194	1.00[AMR][1000 genomes]
rs73943198	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv963919	chr2:72372956-72830387	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1005487	chr2:72464784-72819704	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72517000-72520600	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr2:72517400-72521000	Weak transcription	NHDF-Ad	bronchial
3	chr2:72517800-72520600	Enhancers	A549	lung
4	chr2:72518200-72519000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr2:72518600-72519200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr2:72518600-72520600	Weak transcription	Osteobl	bone
7	chr2:72518800-72520800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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