Variant report

Variant	rs55985624
Chromosome Location	chr10:50072074-50072075
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2127591	1.00[EUR][1000 genomes]
rs2620877	0.82[EUR][1000 genomes]
rs2620879	0.88[EUR][1000 genomes]
rs2620895	0.94[EUR][1000 genomes]
rs2620897	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2620905	1.00[EUR][1000 genomes]
rs2620906	1.00[EUR][1000 genomes]
rs2928399	1.00[EUR][1000 genomes]
rs2928400	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2940713	1.00[EUR][1000 genomes]
rs2940714	1.00[EUR][1000 genomes]
rs59793264	1.00[EUR][1000 genomes]
rs60994897	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831865	chr10:49994254-50164239	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50054400-50081600	Weak transcription	Spleen	Spleen
2	chr10:50060200-50075600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr10:50060600-50075400	Weak transcription	Primary T cells from cord blood	blood
4	chr10:50065000-50075400	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr10:50068600-50075200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr10:50069800-50074400	Weak transcription	GM12878-XiMat	blood
7	chr10:50070000-50074600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr10:50070200-50072800	Weak transcription	Primary B cells from peripheral blood	blood
9	chr10:50070600-50073200	Strong transcription	Primary B cells from cord blood	blood
10	chr10:50071000-50074200	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr10:50071200-50075200	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr10:50071800-50072600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr10:50072000-50072200	ZNF genes & repeats	Gastric	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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