Variant report

Variant	rs2620895
Chromosome Location	chr10:50023801-50023802
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:50021873..50024313-chr10:50091806..50093411,2	MCF-7	breast:
2	chr10:50022212..50024156-chr10:50029662..50031442,2	MCF-7	breast:
3	chr10:50023366..50027045-chr10:50027536..50030400,3	K562	blood:
4	chr10:50021104..50023943-chr10:50032685..50035174,2	MCF-7	breast:
5	chr10:50009310..50017840-chr10:50018505..50026491,17	MCF-7	breast:

Variant related genes	Relation type
ENSG00000128815	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11101556	1.00[CEU][hapmap]
rs11101557	1.00[CEU][hapmap]
rs12256788	1.00[CEU][hapmap]
rs12257105	1.00[CEU][hapmap]
rs12263240	1.00[CEU][hapmap]
rs12267434	1.00[CEU][hapmap]
rs17011387	1.00[CEU][hapmap]
rs17011395	1.00[CEU][hapmap]
rs2127591	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2620877	1.00[CEU][hapmap]
rs2620879	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2620897	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2620905	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2620906	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2671713	1.00[CEU][hapmap]
rs2928399	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2928400	0.94[EUR][1000 genomes]
rs2940713	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2940714	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs55985624	0.94[EUR][1000 genomes]
rs59793264	0.94[EUR][1000 genomes]
rs60994897	0.81[EUR][1000 genomes]
rs7098403	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831865	chr10:49994254-50164239	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50005200-50026800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:50009600-50028000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:50013600-50028200	Strong transcription	Primary B cells from peripheral blood	blood
4	chr10:50013600-50061000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr10:50014200-50030000	Weak transcription	Right Atrium	heart
6	chr10:50015200-50063400	Strong transcription	Primary B cells from cord blood	blood
7	chr10:50015600-50029800	Weak transcription	Gastric	stomach
8	chr10:50016200-50063000	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr10:50016200-50063000	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr10:50016600-50062400	Strong transcription	Primary neutrophils fromperipheralblood	blood
11	chr10:50019400-50029000	Weak transcription	Primary T cells from cord blood	blood
12	chr10:50020000-50052000	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr10:50021200-50027800	Weak transcription	Fetal Thymus	thymus
14	chr10:50022200-50025200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr10:50022400-50025200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr10:50022600-50025200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr10:50022600-50040400	Weak transcription	Lung	lung
18	chr10:50022800-50025200	Weak transcription	Spleen	Spleen
19	chr10:50023000-50025000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr10:50023200-50025000	Weak transcription	Primary hematopoietic stem cells	blood
21	chr10:50023200-50025000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr10:50023400-50029200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr10:50023800-50025400	Weak transcription	GM12878-XiMat	blood

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