Variant report

Variant	rs17011395
Chromosome Location	chr10:50103690-50103691
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50099890..50101480-chr10:50101582..50103929,2	MCF-7	breast:
2	chr10:50103563..50106374-chr10:50108506..50110662,3	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11101556	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11101557	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[EUR][1000 genomes]
rs11101561	0.89[EUR][1000 genomes]
rs12256788	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12257105	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12263240	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12267434	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17011387	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2127591	1.00[CEU][hapmap]
rs2620877	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs2620879	1.00[CEU][hapmap]
rs2620895	1.00[CEU][hapmap]
rs2620897	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap]
rs2620905	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs2620906	1.00[CEU][hapmap]
rs2671713	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2928399	1.00[CEU][hapmap]
rs2940713	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs2940714	1.00[CEU][hapmap]
rs56307938	1.00[EUR][1000 genomes]
rs60438808	1.00[EUR][1000 genomes]
rs60751127	1.00[EUR][1000 genomes]
rs7098403	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7909682	1.00[EUR][1000 genomes]
rs7920772	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831865	chr10:49994254-50164239	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv975799	chr10:50102058-50106456	Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50072800-50126200	Strong transcription	Primary B cells from peripheral blood	blood
2	chr10:50074200-50107000	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr10:50074600-50129600	Strong transcription	Primary B cells from cord blood	blood
4	chr10:50075400-50126000	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr10:50088000-50109400	Weak transcription	Right Atrium	heart
6	chr10:50092600-50106800	Weak transcription	Primary T cells from cord blood	blood
7	chr10:50096600-50106200	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr10:50096600-50107800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr10:50098000-50105400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr10:50098000-50110000	Strong transcription	Primary hematopoietic stem cells	blood
11	chr10:50098200-50110200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr10:50099600-50108400	Weak transcription	Adipose Nuclei	Adipose
13	chr10:50101600-50122800	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr10:50102000-50107000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr10:50102400-50105000	Enhancers	Fetal Stomach	stomach
16	chr10:50102600-50104800	Enhancers	Fetal Lung	lung
17	chr10:50102600-50104800	Enhancers	Fetal Muscle Trunk	muscle
18	chr10:50102600-50105200	Enhancers	Fetal Muscle Leg	muscle
19	chr10:50102600-50106000	Strong transcription	Spleen	Spleen
20	chr10:50103200-50104800	Enhancers	Ovary	ovary
21	chr10:50103400-50108400	Weak transcription	Left Ventricle	heart
22	chr10:50103600-50104600	Weak transcription	Gastric	stomach
23	chr10:50103600-50104600	Weak transcription	Lung	lung
24	chr10:50103600-50104600	Weak transcription	Right Ventricle	heart
25	chr10:50103600-50105200	Weak transcription	NHDF-Ad	bronchial
26	chr10:50103600-50105800	Weak transcription	GM12878-XiMat	blood

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