Variant report

Variant	rs56307938
Chromosome Location	chr10:50118926-50118927
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11101556	1.00[EUR][1000 genomes]
rs11101557	1.00[EUR][1000 genomes]
rs11101561	0.89[EUR][1000 genomes]
rs12256788	1.00[EUR][1000 genomes]
rs12257105	1.00[EUR][1000 genomes]
rs12263240	1.00[EUR][1000 genomes]
rs12267434	1.00[EUR][1000 genomes]
rs17011387	1.00[EUR][1000 genomes]
rs17011395	1.00[EUR][1000 genomes]
rs2671713	0.95[EUR][1000 genomes]
rs60438808	1.00[EUR][1000 genomes]
rs60751127	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7098403	1.00[EUR][1000 genomes]
rs7909682	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831865	chr10:49994254-50164239	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50072800-50126200	Strong transcription	Primary B cells from peripheral blood	blood
2	chr10:50074600-50129600	Strong transcription	Primary B cells from cord blood	blood
3	chr10:50075400-50126000	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr10:50101600-50122800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr10:50104800-50119200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:50108400-50126000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr10:50109000-50126000	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr10:50109400-50127800	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr10:50110200-50120400	Weak transcription	Primary T cells from cord blood	blood
10	chr10:50114000-50120200	Weak transcription	Fetal Stomach	stomach
11	chr10:50114200-50122800	Weak transcription	Lung	lung
12	chr10:50116200-50121400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr10:50118000-50119600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr10:50118200-50121000	Strong transcription	Primary hematopoietic stem cells	blood
15	chr10:50118200-50121000	Strong transcription	Spleen	Spleen
16	chr10:50118200-50124800	Strong transcription	GM12878-XiMat	blood
17	chr10:50118400-50119400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr10:50118800-50123600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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