Variant report

Variant	rs7098403
Chromosome Location	chr10:50109330-50109331
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50103563..50106374-chr10:50108506..50110662,3	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11101556	1.00[CEU][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11101557	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11101561	0.89[EUR][1000 genomes]
rs12256788	1.00[CEU][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12257105	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12263240	1.00[CEU][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12267434	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17011387	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17011395	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2127591	1.00[CEU][hapmap]
rs2620877	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs2620879	1.00[CEU][hapmap]
rs2620895	1.00[CEU][hapmap]
rs2620897	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap]
rs2620905	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs2620906	1.00[CEU][hapmap]
rs2671713	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs2928399	1.00[CEU][hapmap]
rs2940713	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs2940714	1.00[CEU][hapmap]
rs56307938	1.00[EUR][1000 genomes]
rs60438808	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60751127	1.00[EUR][1000 genomes]
rs7909682	1.00[EUR][1000 genomes]
rs7920772	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831865	chr10:49994254-50164239	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50072800-50126200	Strong transcription	Primary B cells from peripheral blood	blood
2	chr10:50074600-50129600	Strong transcription	Primary B cells from cord blood	blood
3	chr10:50075400-50126000	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr10:50088000-50109400	Weak transcription	Right Atrium	heart
5	chr10:50098000-50110000	Strong transcription	Primary hematopoietic stem cells	blood
6	chr10:50098200-50110200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr10:50101600-50122800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr10:50104000-50115800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:50104800-50119200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr10:50105800-50110200	Strong transcription	GM12878-XiMat	blood
11	chr10:50106200-50113600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr10:50106800-50110200	Strong transcription	Primary T cells from cord blood	blood
13	chr10:50107800-50109600	Enhancers	Fetal Stomach	stomach
14	chr10:50107800-50110000	Enhancers	Fetal Muscle Leg	muscle
15	chr10:50107800-50110400	Enhancers	Fetal Muscle Trunk	muscle
16	chr10:50108400-50109600	Enhancers	Left Ventricle	heart
17	chr10:50108400-50109800	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr10:50108400-50126000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr10:50108600-50110400	Strong transcription	Spleen	Spleen
20	chr10:50109000-50110000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr10:50109000-50126000	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr10:50109200-50109400	Weak transcription	Primary monocytes fromperipheralblood	blood

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