Variant report

Variant	rs2620906
Chromosome Location	chr10:50051811-50051812
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11101556	1.00[CEU][hapmap]
rs11101557	1.00[CEU][hapmap]
rs12256788	1.00[CEU][hapmap]
rs12257105	1.00[CEU][hapmap]
rs12263240	1.00[CEU][hapmap]
rs12267434	1.00[CEU][hapmap]
rs17011387	1.00[CEU][hapmap]
rs17011395	1.00[CEU][hapmap]
rs2127591	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2620877	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2620879	1.00[CEU][hapmap];0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs2620895	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2620897	1.00[CEU][hapmap];0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2620905	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2671713	1.00[CEU][hapmap]
rs2928399	1.00[CEU][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2928400	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2940713	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2940714	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55985624	1.00[EUR][1000 genomes]
rs59793264	1.00[EUR][1000 genomes]
rs60994897	0.88[EUR][1000 genomes]
rs7098403	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831865	chr10:49994254-50164239	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50013600-50061000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr10:50015200-50063400	Strong transcription	Primary B cells from cord blood	blood
3	chr10:50016200-50063000	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr10:50016200-50063000	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr10:50016600-50062400	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr10:50020000-50052000	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr10:50025000-50062800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr10:50028600-50070200	Strong transcription	Primary B cells from peripheral blood	blood
9	chr10:50029200-50052000	Strong transcription	Primary hematopoietic stem cells	blood
10	chr10:50041600-50055400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr10:50042200-50059200	Weak transcription	Primary T cells from cord blood	blood
12	chr10:50044600-50057200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr10:50047200-50052400	Weak transcription	Fetal Muscle Trunk	muscle
14	chr10:50047200-50054200	Weak transcription	Right Atrium	heart
15	chr10:50048600-50054600	Weak transcription	Left Ventricle	heart
16	chr10:50051200-50052400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr10:50051200-50053200	Weak transcription	Spleen	Spleen
18	chr10:50051400-50052800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr10:50051400-50053200	Weak transcription	GM12878-XiMat	blood

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