Variant report

Variant	rs55986996
Chromosome Location	chr5:118767488-118767489
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11539471	1.00[ASN][1000 genomes]
rs11746780	1.00[ASN][1000 genomes]
rs11748477	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11748530	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11959717	1.00[ASN][1000 genomes]
rs17145372	0.91[AFR][1000 genomes]
rs17145469	1.00[ASN][1000 genomes]
rs17145473	1.00[ASN][1000 genomes]
rs17145475	1.00[ASN][1000 genomes]
rs17145476	1.00[ASN][1000 genomes]
rs17145477	1.00[ASN][1000 genomes]
rs28943596	1.00[ASN][1000 genomes]
rs34338122	1.00[ASN][1000 genomes]
rs3850201	1.00[ASN][1000 genomes]
rs3991755	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4895192	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs4895194	1.00[ASN][1000 genomes]
rs4895195	1.00[ASN][1000 genomes]
rs4895374	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs56050317	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56194667	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs56263494	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56411336	1.00[ASN][1000 genomes]
rs58354605	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60497431	1.00[ASN][1000 genomes]
rs60795377	0.85[AFR][1000 genomes]
rs60796985	1.00[ASN][1000 genomes]
rs61415411	0.96[AFR][1000 genomes]
rs61457439	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66462865	1.00[ASN][1000 genomes]
rs66831568	1.00[ASN][1000 genomes]
rs67990368	1.00[ASN][1000 genomes]
rs68126620	1.00[ASN][1000 genomes]
rs72788162	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs72788163	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs72788194	1.00[ASN][1000 genomes]
rs72788197	1.00[ASN][1000 genomes]
rs72788199	1.00[ASN][1000 genomes]
rs72790203	1.00[ASN][1000 genomes]
rs72790207	1.00[ASN][1000 genomes]
rs72790214	1.00[ASN][1000 genomes]
rs72790217	1.00[ASN][1000 genomes]
rs72790221	1.00[ASN][1000 genomes]
rs72790222	1.00[ASN][1000 genomes]
rs73790862	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030717	chr5:118709310-118836951	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv427732	chr5:118730999-119034741	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv4974	chr5:118750259-118795376	Genic enhancers Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118763800-118773000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr5:118765000-118770800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:118767400-118769400	Weak transcription	Primary B cells from peripheral blood	blood

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