Variant report

Variant	rs55987745
Chromosome Location	chr4:90017442-90017443
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1513820	0.81[ASN][1000 genomes]
rs17015025	0.87[ASN][1000 genomes]
rs17768752	0.81[ASN][1000 genomes]
rs17769356	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17770293	0.84[ASN][1000 genomes]
rs17819929	0.81[ASN][1000 genomes]
rs17820320	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1921680	0.81[ASN][1000 genomes]
rs2175821	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2280099	0.87[ASN][1000 genomes]
rs2869974	0.81[ASN][1000 genomes]
rs3822085	0.87[ASN][1000 genomes]
rs5026462	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55885459	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56038841	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56165603	0.87[ASN][1000 genomes]
rs56672432	0.81[ASN][1000 genomes]
rs56719325	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59188553	0.81[ASN][1000 genomes]
rs59283403	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59586695	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60213126	0.81[ASN][1000 genomes]
rs60591238	0.81[ASN][1000 genomes]
rs60751124	0.81[ASN][1000 genomes]
rs62306393	0.84[ASN][1000 genomes]
rs6822256	0.81[ASN][1000 genomes]
rs72665867	0.81[ASN][1000 genomes]
rs72665882	0.81[ASN][1000 genomes]
rs72665892	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72665898	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72665902	0.83[ASN][1000 genomes]
rs72668111	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72668112	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72668120	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72668125	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72668127	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72668130	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72668134	0.84[ASN][1000 genomes]
rs72668135	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72668138	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72668144	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72668152	0.87[ASN][1000 genomes]
rs72668154	0.87[ASN][1000 genomes]
rs72668156	0.87[ASN][1000 genomes]
rs72668157	0.87[ASN][1000 genomes]
rs72668165	0.87[ASN][1000 genomes]
rs72668167	0.87[ASN][1000 genomes]
rs72668171	0.87[ASN][1000 genomes]
rs72668179	0.84[ASN][1000 genomes]
rs7660709	0.83[ASN][1000 genomes]
rs7669140	0.84[ASN][1000 genomes]
rs7689498	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8582	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470051	chr4:89644931-90643144	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1007025	chr4:89837734-90098046	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv537176	chr4:89837734-90098046	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1002448	chr4:89933385-90128133	Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv3438110	chr4:90016954-90019802	Weak transcription	n/a	n/a	inside rSNPs	diseases
6	esv3395246	chr4:90017079-90019427	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:90017200-90031600	Weak transcription	Right Atrium	heart

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