The 2.0 version of rSNPBase

Variant report

Variant rs55989868
Chromosome Location chr19:24299818-24299819
allele A/G/T
Outlinks Ensembl   UCSC
Chromatin state (count:106 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:24271200-24300200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
2 chr19:24271400-24301400 Weak transcription HSMMtube muscle
3 chr19:24271400-24308600 Weak transcription K562 blood
4 chr19:24284800-24300400 Weak transcription Brain Cingulate Gyrus brain
5 chr19:24285000-24302200 Weak transcription Brain Substantia Nigra brain
6 chr19:24291000-24308600 Weak transcription Hela-S3 cervix
7 chr19:24291200-24305800 Weak transcription HUVEC blood vessel
8 chr19:24291400-24300000 Weak transcription Rectal Smooth Muscle rectum
9 chr19:24291400-24300200 Weak transcription Skeletal Muscle Female skeletal muscle
10 chr19:24291400-24300800 Weak transcription Colon Smooth Muscle Colon
11 chr19:24291400-24301600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
12 chr19:24291400-24301600 Weak transcription Muscle Satellite Cultured Cells --
13 chr19:24291400-24302800 Weak transcription NHLF lung
14 chr19:24291400-24305000 Weak transcription Right Ventricle heart
15 chr19:24291600-24301800 Weak transcription NH-A brain
16 chr19:24291600-24307400 Weak transcription Osteobl bone
17 chr19:24291800-24300200 Weak transcription Brain Anterior Caudate brain
18 chr19:24291800-24301000 Weak transcription Primary T helper naive cells from peripheral blood blood
19 chr19:24291800-24301600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
20 chr19:24291800-24303600 Weak transcription NHDF-Ad bronchial
21 chr19:24292000-24309000 Weak transcription Placenta Amnion Placenta Amnion
22 chr19:24293000-24301400 Weak transcription HSMM muscle
23 chr19:24293400-24300400 Weak transcription Skeletal Muscle Male skeletal muscle
24 chr19:24293600-24300400 Weak transcription A549 lung
25 chr19:24296400-24300800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
26 chr19:24296400-24303800 Weak transcription Primary T killer memory cells from peripheral blood blood
27 chr19:24297800-24322600 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
28 chr19:24297800-24323200 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
29 chr19:24298200-24300200 Weak transcription Psoas Muscle Psoas
30 chr19:24298200-24302200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
31 chr19:24298400-24306200 ZNF genes & repeats Cortex derived primary cultured neurospheres brain
32 chr19:24298400-24311200 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
33 chr19:24298400-24323200 ZNF genes & repeats Liver Liver
34 chr19:24298600-24301600 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
35 chr19:24298600-24306400 ZNF genes & repeats Adipose Nuclei Adipose
36 chr19:24298800-24300400 Weak transcription Primary T regulatory cells fromperipheralblood blood
37 chr19:24298800-24300800 Strong transcription Primary T helper cells fromperipheralblood blood
38 chr19:24298800-24301000 Weak transcription Primary T cells from cord blood blood
39 chr19:24299000-24311200 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
40 chr19:24299200-24300000 Strong transcription Stomach Smooth Muscle stomach
41 chr19:24299200-24301200 Strong transcription Fetal Kidney kidney
42 chr19:24299200-24305800 ZNF genes & repeats Pancreatic Islets Pancreatic Islet
43 chr19:24299200-24306600 ZNF genes & repeats hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
44 chr19:24299200-24312400 ZNF genes & repeats HUES48 Cell Line embryonic stem cell
45 chr19:24299200-24323200 ZNF genes & repeats Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
46 chr19:24299600-24300000 ZNF genes & repeats Primary T cells fromperipheralblood blood
47 chr19:24299600-24300000 ZNF genes & repeats Small Intestine intestine
48 chr19:24299600-24300200 Strong transcription Brain Hippocampus Middle brain
49 chr19:24299600-24300600 Strong transcription Brain Angular Gyrus brain
50 chr19:24299600-24300600 Strong transcription Fetal Intestine Large intestine

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Last update: Aug 31, 2015