Variant report

Variant	rs55997583
Chromosome Location	chr1:90750470-90750471
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs4417050	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57765267	0.91[AFR][1000 genomes]
rs60830341	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61480746	0.91[AFR][1000 genomes]
rs6669707	0.93[AFR][1000 genomes]
rs74099409	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74099414	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv546803	chr1:90679734-90777717	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv524317	chr1:90729744-90836739	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:90736200-90752000	Weak transcription	Aorta	Aorta
2	chr1:90748400-90750800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr1:90748400-90751400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr1:90748400-90753000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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