Variant report
| Variant | rs74099414 |
|---|---|
| Chromosome Location | chr1:90762731-90762732 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-BARHL2-2 | chr1:90762498-90763021 | XLOC_000913 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:7)
| rs_ID | r2[population] |
|---|---|
| rs4417050 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs55997583 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57765267 | 0.89[AFR][1000 genomes] |
| rs60830341 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61480746 | 0.89[AFR][1000 genomes] |
| rs6669707 | 0.92[AFR][1000 genomes] |
| rs74099409 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv546803 | chr1:90679734-90777717 | Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv524317 | chr1:90729744-90836739 | Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv946065 | chr1:90752199-90763787 | Enhancers Weak transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
