Variant report

Variant	rs74099409
Chromosome Location	chr1:90742175-90742176
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs4417050	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55997583	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57765267	0.85[AFR][1000 genomes]
rs60830341	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61480746	0.85[AFR][1000 genomes]
rs6669707	0.87[AFR][1000 genomes]
rs74099414	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv546803	chr1:90679734-90777717	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv524317	chr1:90729744-90836739	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:90736200-90752000	Weak transcription	Aorta	Aorta
2	chr1:90740600-90742600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:90740600-90743000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr1:90741200-90742200	Weak transcription	Gastric	stomach
5	chr1:90741200-90746600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr1:90742000-90747200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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