Variant report

Variant	rs56015007
Chromosome Location	chr7:118836991-118836992
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12333381	0.85[EUR][1000 genomes]
rs17132650	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17142040	0.81[EUR][1000 genomes]
rs28409111	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58247451	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58579703	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58825456	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58954362	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60486580	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6954277	0.81[EUR][1000 genomes]
rs73478887	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73478890	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73478892	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73478899	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73478900	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73480807	0.93[EUR][1000 genomes]
rs73480810	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73718376	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73718386	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73718698	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73718780	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73718786	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73718922	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73718931	0.86[EUR][1000 genomes]
rs7801629	0.81[EUR][1000 genomes]
rs7811688	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889098	chr7:118590050-118896639	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv1825159	chr7:118640865-118842361	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv889099	chr7:118709754-118868426	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv889100	chr7:118744450-119247571	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv889101	chr7:118778802-119177670	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1023789	chr7:118803459-118854579	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv5925	chr7:118804702-118841585	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv608268	chr7:118829223-118838796	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv608269	chr7:118829223-118839780	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
10	nsv608274	chr7:118831375-118838796	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
11	nsv608275	chr7:118831375-118845608	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
12	nsv608283	chr7:118831821-118838796	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
13	nsv608284	chr7:118831821-118839780	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
14	nsv608290	chr7:118832226-118838796	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
15	nsv608291	chr7:118832226-118850537	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
16	nsv608294	chr7:118832350-118838796	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
17	nsv608299	chr7:118832737-118838796	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
18	nsv608301	chr7:118832788-118838796	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
19	nsv608302	chr7:118832967-118838796	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:118836600-118837000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr7:118836600-118838000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr7:118836600-118838200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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