Variant report

Variant	rs73480810
Chromosome Location	chr7:118830958-118830959
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:118829678..118832309-chr7:118833350..118835537,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12333381	0.85[EUR][1000 genomes]
rs17132650	0.88[EUR][1000 genomes]
rs17142040	0.81[EUR][1000 genomes]
rs28409111	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56015007	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58247451	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58579703	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58825456	0.94[EUR][1000 genomes]
rs58954362	0.88[EUR][1000 genomes]
rs60486580	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6954277	0.81[EUR][1000 genomes]
rs73478887	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73478890	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73478892	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73478899	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73478900	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73480807	0.93[EUR][1000 genomes]
rs73718376	0.87[EUR][1000 genomes]
rs73718386	0.94[EUR][1000 genomes]
rs73718698	0.93[EUR][1000 genomes]
rs73718780	1.00[EUR][1000 genomes]
rs73718786	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73718922	0.88[EUR][1000 genomes]
rs73718931	0.86[EUR][1000 genomes]
rs7801629	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889098	chr7:118590050-118896639	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv1825159	chr7:118640865-118842361	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv889099	chr7:118709754-118868426	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv889100	chr7:118744450-119247571	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv889101	chr7:118778802-119177670	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv1793187	chr7:118794683-118834412	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv1830301	chr7:118794683-118834412	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1023789	chr7:118803459-118854579	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv5925	chr7:118804702-118841585	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv608265	chr7:118829223-118834004	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
11	nsv608266	chr7:118829223-118834466	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
12	nsv608267	chr7:118829223-118834676	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
13	nsv608268	chr7:118829223-118838796	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
14	nsv608269	chr7:118829223-118839780	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
15	esv3475366	chr7:118829316-118836714	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
16	esv3475370	chr7:118830241-118836089	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
17	esv2641520	chr7:118830599-118835478	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
18	esv3475365	chr7:118830816-118835314	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
19	esv3475369	chr7:118830860-118835063	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:118828200-118832200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links