Variant report

Variant	rs17142040
Chromosome Location	chr7:118747198-118747199
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10229061	0.89[EUR][1000 genomes]
rs10230384	0.89[EUR][1000 genomes]
rs10238286	0.89[EUR][1000 genomes]
rs11974339	0.89[EUR][1000 genomes]
rs12333381	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12530696	0.89[EUR][1000 genomes]
rs12535568	0.89[EUR][1000 genomes]
rs2402472	0.89[EUR][1000 genomes]
rs28409111	0.81[EUR][1000 genomes]
rs2896282	0.89[EUR][1000 genomes]
rs5008597	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56015007	0.81[EUR][1000 genomes]
rs58247451	0.81[EUR][1000 genomes]
rs58579703	0.81[EUR][1000 genomes]
rs58825456	0.87[EUR][1000 genomes]
rs58954362	0.93[EUR][1000 genomes]
rs60486580	0.81[EUR][1000 genomes]
rs61262878	0.89[EUR][1000 genomes]
rs6960072	0.89[EUR][1000 genomes]
rs73478887	0.81[EUR][1000 genomes]
rs73478890	0.81[EUR][1000 genomes]
rs73478892	0.81[EUR][1000 genomes]
rs73478899	0.81[EUR][1000 genomes]
rs73478900	0.81[EUR][1000 genomes]
rs73480810	0.81[EUR][1000 genomes]
rs73718376	0.94[EUR][1000 genomes]
rs73718386	0.87[EUR][1000 genomes]
rs73718780	0.81[EUR][1000 genomes]
rs73718786	0.81[EUR][1000 genomes]
rs7776651	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7782105	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7811688	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889098	chr7:118590050-118896639	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv1825159	chr7:118640865-118842361	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv889099	chr7:118709754-118868426	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv889100	chr7:118744450-119247571	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:118740600-118747600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:118743800-118747200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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