Variant report

Variant	rs10230384
Chromosome Location	chr7:118742974-118742975
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:118742557..118744399-chr7:118756096..118757786,2	K562	blood:
2	chr7:118733515..118736474-chr7:118742172..118744304,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10229061	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10238286	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10428938	1.00[ASN][1000 genomes]
rs10429110	1.00[ASN][1000 genomes]
rs11974339	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11982910	1.00[ASN][1000 genomes]
rs11983655	1.00[ASN][1000 genomes]
rs12333381	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12530696	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12535568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17142040	0.89[EUR][1000 genomes]
rs17142044	1.00[ASN][1000 genomes]
rs2402472	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2896282	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5008597	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58825456	0.83[EUR][1000 genomes]
rs58954362	0.89[EUR][1000 genomes]
rs58995702	1.00[ASN][1000 genomes]
rs59542865	1.00[ASN][1000 genomes]
rs59579039	1.00[ASN][1000 genomes]
rs59876674	1.00[ASN][1000 genomes]
rs60400629	1.00[ASN][1000 genomes]
rs60633631	1.00[ASN][1000 genomes]
rs60719196	1.00[ASN][1000 genomes]
rs61253321	1.00[ASN][1000 genomes]
rs61262878	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6960072	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73718376	0.90[EUR][1000 genomes]
rs73718386	0.83[EUR][1000 genomes]
rs7776651	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7782105	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7811650	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7811688	0.86[EUR][1000 genomes]
rs9784954	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889098	chr7:118590050-118896639	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv1825159	chr7:118640865-118842361	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv889099	chr7:118709754-118868426	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv528448	chr7:118733415-118744450	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:118739200-118743200	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr7:118740600-118747600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:118741000-118743200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr7:118741000-118743600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr7:118741000-118743800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr7:118741000-118745600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:118741400-118743200	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr7:118741400-118743400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr7:118741400-118743600	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr7:118742000-118743000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr7:118742000-118744800	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr7:118742400-118743200	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr7:118742600-118743800	Enhancers	Fetal Lung	lung
14	chr7:118742800-118744200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links