Variant report
| Variant | rs10428938 |
|---|---|
| Chromosome Location | chr7:118711821-118711822 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10229061 | 1.00[ASN][1000 genomes] |
| rs10230384 | 1.00[ASN][1000 genomes] |
| rs10238286 | 1.00[ASN][1000 genomes] |
| rs10429110 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11974339 | 1.00[ASN][1000 genomes] |
| rs11982910 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11983655 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12530696 | 1.00[ASN][1000 genomes] |
| rs12535568 | 1.00[ASN][1000 genomes] |
| rs17142044 | 1.00[ASN][1000 genomes] |
| rs2402472 | 1.00[ASN][1000 genomes] |
| rs2896282 | 1.00[ASN][1000 genomes] |
| rs5008597 | 1.00[ASN][1000 genomes] |
| rs58995702 | 0.86[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59542865 | 1.00[ASN][1000 genomes] |
| rs59579039 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59876674 | 1.00[ASN][1000 genomes] |
| rs60400629 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60633631 | 1.00[ASN][1000 genomes] |
| rs60719196 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61253321 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61262878 | 1.00[ASN][1000 genomes] |
| rs6960072 | 1.00[ASN][1000 genomes] |
| rs7776651 | 1.00[ASN][1000 genomes] |
| rs7782105 | 1.00[ASN][1000 genomes] |
| rs7811650 | 1.00[ASN][1000 genomes] |
| rs9784954 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1021902 | chr7:118452600-118719244 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv831110 | chr7:118543340-118739362 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv889098 | chr7:118590050-118896639 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | esv1825159 | chr7:118640865-118842361 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv889099 | chr7:118709754-118868426 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:118711400-118714000 | Weak transcription | HUES48 Cell Line | embryonic stem cell |
| 2 | chr7:118711400-118714400 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
| 3 | chr7:118711800-118712000 | Enhancers | iPS-15b Cell Line | embryonic stem cell |
