Variant report

Variant	rs12535568
Chromosome Location	chr7:118737772-118737773
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10229061	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10230384	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10238286	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10428938	1.00[ASN][1000 genomes]
rs10429110	1.00[ASN][1000 genomes]
rs11974339	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11982910	1.00[ASN][1000 genomes]
rs11983655	1.00[ASN][1000 genomes]
rs12333381	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12530696	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17142040	0.89[EUR][1000 genomes]
rs17142044	1.00[ASN][1000 genomes]
rs2402472	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2896282	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5008597	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58825456	0.83[EUR][1000 genomes]
rs58954362	0.89[EUR][1000 genomes]
rs58995702	1.00[ASN][1000 genomes]
rs59542865	1.00[ASN][1000 genomes]
rs59579039	1.00[ASN][1000 genomes]
rs59876674	1.00[ASN][1000 genomes]
rs60400629	1.00[ASN][1000 genomes]
rs60633631	1.00[ASN][1000 genomes]
rs60719196	1.00[ASN][1000 genomes]
rs61253321	1.00[ASN][1000 genomes]
rs61262878	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6960072	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73718376	0.90[EUR][1000 genomes]
rs73718386	0.83[EUR][1000 genomes]
rs7776651	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7782105	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7811650	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7811688	0.86[EUR][1000 genomes]
rs9784954	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831110	chr7:118543340-118739362	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv889098	chr7:118590050-118896639	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv1825159	chr7:118640865-118842361	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv889099	chr7:118709754-118868426	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv528448	chr7:118733415-118744450	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:118735400-118740600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr7:118736200-118739800	Weak transcription	H9 Cell Line	embryonic stem cell

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