Variant report

Variant	rs56021645
Chromosome Location	chr4:127782337-127782338
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs11098905	0.82[AMR][1000 genomes]
rs11724587	0.90[AMR][1000 genomes]
rs11724702	0.90[AMR][1000 genomes]
rs11731527	0.90[AMR][1000 genomes]
rs11732835	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs11942125	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs12498197	0.85[AMR][1000 genomes]
rs12503377	0.85[AMR][1000 genomes]
rs12504419	0.83[AMR][1000 genomes]
rs12511029	0.83[AMR][1000 genomes]
rs12512914	0.83[AMR][1000 genomes]
rs13104202	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs13107479	0.84[AMR][1000 genomes]
rs13110529	0.83[AMR][1000 genomes]
rs13114288	0.88[AMR][1000 genomes]
rs13114331	0.86[AMR][1000 genomes]
rs13115066	0.87[AMR][1000 genomes]
rs13121117	0.87[AMR][1000 genomes]
rs13124612	0.83[AMR][1000 genomes]
rs13125496	0.83[AMR][1000 genomes]
rs13129761	0.84[AMR][1000 genomes]
rs13131302	0.85[AMR][1000 genomes]
rs13135503	0.89[AMR][1000 genomes]
rs13139253	0.85[AMR][1000 genomes]
rs13141430	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs13148797	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs13149848	0.83[AMR][1000 genomes]
rs13151401	0.82[AMR][1000 genomes]
rs1472702	0.82[AFR][1000 genomes]
rs1503627	0.85[AMR][1000 genomes]
rs1510665	0.86[AMR][1000 genomes]
rs1510669	0.83[AMR][1000 genomes]
rs1510672	0.83[AMR][1000 genomes]
rs1604721	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs1604722	0.92[AMR][1000 genomes]
rs17011777	0.85[AMR][1000 genomes]
rs17011779	0.85[AMR][1000 genomes]
rs1877066	0.83[AMR][1000 genomes]
rs1877067	0.82[AMR][1000 genomes]
rs2048379	0.84[AMR][1000 genomes]
rs2134643	0.85[AMR][1000 genomes]
rs2391097	0.85[AMR][1000 genomes]
rs34597806	0.84[AMR][1000 genomes]
rs4270599	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs4303993	0.83[AMR][1000 genomes]
rs4365742	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs4397007	0.90[AMR][1000 genomes]
rs4492022	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs4554089	0.83[AMR][1000 genomes]
rs4599427	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs4639084	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs4833357	0.89[AMR][1000 genomes]
rs4833358	0.83[AMR][1000 genomes]
rs4833360	0.83[AMR][1000 genomes]
rs4834148	0.89[AMR][1000 genomes]
rs4834151	0.84[AMR][1000 genomes]
rs4834152	0.89[AMR][1000 genomes]
rs4834153	0.83[AMR][1000 genomes]
rs4834154	0.83[AMR][1000 genomes]
rs4834155	0.83[AMR][1000 genomes]
rs4834156	0.81[AMR][1000 genomes]
rs6815811	0.83[AMR][1000 genomes]
rs6821148	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs6822430	0.83[AMR][1000 genomes]
rs6831218	0.82[AMR][1000 genomes]
rs6832255	0.82[AMR][1000 genomes]
rs6844304	0.83[AMR][1000 genomes]
rs6848548	0.82[AMR][1000 genomes]
rs6856247	0.83[AMR][1000 genomes]
rs7439947	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs7655752	0.83[AMR][1000 genomes]
rs7656539	0.82[AMR][1000 genomes]
rs7674389	0.83[AMR][1000 genomes]
rs7677910	0.89[AMR][1000 genomes]
rs7678163	0.83[AMR][1000 genomes]
rs7679139	0.83[AMR][1000 genomes]
rs7698395	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879909	chr4:127646765-127792639	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv879910	chr4:127646765-127805466	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv879911	chr4:127646765-127835677	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv428773	chr4:127760014-127913973	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127772800-127792000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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