Variant report

Variant	rs4834154
Chromosome Location	chr4:127837059-127837060
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:127836489..127839224-chr4:127843135..127845603,3	K562	blood:
2	chr4:127828787..127834118-chr4:127834409..127837333,4	K562	blood:
3	chr4:127834827..127837807-chr4:127876060..127878431,3	K562	blood:
4	chr4:127661681..127663731-chr4:127834793..127837662,2	K562	blood:
5	chr4:127815806..127818059-chr4:127836470..127838951,2	K562	blood:
6	chr4:127836337..127838086-chr4:127874738..127876500,2	K562	blood:
7	chr4:127836086..127837603-chr4:127876931..127879526,2	K562	blood:

No data

Extended variants
information (count: 127 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:125)

rs_ID	r²[population]
rs10014196	0.81[ASN][1000 genomes]
rs10016117	0.84[CEU][hapmap]
rs10446736	0.82[EUR][1000 genomes]
rs11098902	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11098905	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1155256	0.84[ASN][1000 genomes]
rs11721464	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11723829	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11724587	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11724702	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11731527	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11732835	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11736547	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11942125	0.90[AMR][1000 genomes]
rs12498197	0.91[AMR][1000 genomes]
rs12502193	0.84[ASN][1000 genomes]
rs12503377	0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12504419	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12508997	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12509001	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12510422	0.81[ASN][1000 genomes]
rs12511029	0.84[AMR][1000 genomes]
rs12512914	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12647550	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs12647626	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs13101381	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13104202	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13107386	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13107479	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13110529	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13111315	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13114288	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13114331	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13115066	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13121117	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13123992	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13124612	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13125496	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13129761	0.90[AMR][1000 genomes]
rs13131302	0.91[AMR][1000 genomes]
rs13135503	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13138236	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13139253	0.91[AMR][1000 genomes]
rs13141430	0.86[AMR][1000 genomes]
rs13141720	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13142058	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13142376	0.89[JPT][hapmap]
rs13148797	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13149848	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13151401	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1472702	0.81[EUR][1000 genomes]
rs1503627	0.91[AMR][1000 genomes]
rs1503632	0.82[EUR][1000 genomes]
rs1503634	0.82[EUR][1000 genomes]
rs1510665	0.85[AMR][1000 genomes]
rs1510669	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1510672	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1533089	0.81[ASN][1000 genomes]
rs1567491	0.82[ASN][1000 genomes]
rs1588463	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1604721	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1604722	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16997944	0.82[EUR][1000 genomes]
rs17011777	0.91[AMR][1000 genomes]
rs17011779	0.91[AMR][1000 genomes]
rs17011876	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17011922	0.84[ASN][1000 genomes]
rs17011977	0.81[ASN][1000 genomes]
rs1877066	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1877067	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1877072	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1912521	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1995906	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1995907	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2048379	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2134643	0.91[AMR][1000 genomes]
rs2221774	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2391097	0.91[AMR][1000 genomes]
rs34597806	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34872217	0.84[ASN][1000 genomes]
rs4270599	0.85[AMR][1000 genomes]
rs4303993	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4365742	0.85[AMR][1000 genomes]
rs4397007	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4492022	0.85[AMR][1000 genomes]
rs4554089	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4599427	0.88[AMR][1000 genomes]
rs4639084	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4833357	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4833358	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4833360	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4833362	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4834148	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4834151	0.90[AMR][1000 genomes]
rs4834152	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4834153	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4834155	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4834156	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56021645	0.83[AMR][1000 genomes]
rs6534592	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67251456	0.81[ASN][1000 genomes]
rs6815811	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6821148	0.85[AMR][1000 genomes]
rs6822430	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6831218	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6832255	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6837327	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6844304	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6845689	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs6848070	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6848548	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6856247	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71633717	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7439947	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7655752	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7656539	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7674389	0.89[AMR][1000 genomes]
rs7677910	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7678163	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7679139	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7685181	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7698395	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs925374	0.81[ASN][1000 genomes]
rs9942226	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs997404	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428773	chr4:127760014-127913973	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830055	chr4:127794875-127993821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127836200-127837200	Enhancers	NHDF-Ad	bronchial
2	chr4:127836600-127837800	Enhancers	Fetal Brain Male	brain
3	chr4:127836600-127838000	Enhancers	Colon Smooth Muscle	Colon
4	chr4:127836800-127837200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr4:127836800-127837600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr4:127836800-127837600	Enhancers	Fetal Lung	lung
7	chr4:127836800-127837600	Enhancers	NHLF	lung
8	chr4:127836800-127838200	Enhancers	Fetal Muscle Leg	muscle
9	chr4:127837000-127837200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr4:127837000-127837200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr4:127837000-127837200	Enhancers	Fetal Brain Female	brain
12	chr4:127837000-127837400	Enhancers	Osteobl	bone
13	chr4:127837000-127838400	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr4:127837000-127838400	Enhancers	Adipose Nuclei	Adipose
15	chr4:127837000-127838400	Active TSS	K562	blood
16	chr4:127837000-127838600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr4:127837000-127838600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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