Variant report

Variant	rs13142376
Chromosome Location	chr4:127877273-127877274
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:25)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:25 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:127699741..127703647-chr4:127875173..127879234,5	K562	blood:
2	chr4:127856559..127858565-chr4:127877156..127878946,3	K562	blood:
3	chr4:127655542..127661109-chr4:127874426..127880524,8	K562	blood:
4	chr4:127761821..127763813-chr4:127877198..127878709,2	K562	blood:
5	chr4:127652170..127654874-chr4:127875964..127880032,4	K562	blood:
6	chr4:127875956..127880982-chr4:127903671..127906140,4	K562	blood:
7	chr4:127838477..127841001-chr4:127876179..127878168,3	K562	blood:
8	chr4:127638496..127641456-chr4:127876411..127877938,2	K562	blood:
9	chr4:127845036..127847636-chr4:127875844..127878924,3	K562	blood:
10	chr4:127642487..127645698-chr4:127876053..127878799,3	K562	blood:
11	chr4:127875427..127880054-chr4:127888874..127892075,5	K562	blood:
12	chr4:127836086..127837603-chr4:127876931..127879526,2	K562	blood:
13	chr4:127686360..127688227-chr4:127875695..127877283,2	K562	blood:
14	chr4:127657779..127661019-chr4:127875846..127879215,3	K562	blood:
15	chr4:127876797..127878682-chr4:128046816..128049745,2	K562	blood:
16	chr4:127771841..127773556-chr4:127876449..127879979,3	K562	blood:
17	chr4:127875714..127878678-chr4:127910888..127914676,3	K562	blood:
18	chr4:127722324..127726396-chr4:127876150..127878934,3	K562	blood:
19	chr4:127876194..127877904-chr4:127948090..127950804,2	K562	blood:
20	chr4:127694991..127697764-chr4:127874695..127878637,6	K562	blood:
21	chr4:127641934..127643987-chr4:127875955..127878799,2	K562	blood:
22	chr4:127654777..127657151-chr4:127876043..127879204,4	K562	blood:
23	chr4:127695739..127697770-chr4:127877137..127879165,2	K562	blood:
24	chr4:127834827..127837807-chr4:127876060..127878431,3	K562	blood:
25	chr4:127876070..127879293-chr4:127896514..127899164,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000199862	Chromatin interaction

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10000064	0.88[AMR][1000 genomes]
rs10012049	0.92[EUR][1000 genomes]
rs11098905	0.83[ASN][1000 genomes]
rs1155256	0.81[ASN][1000 genomes]
rs11721464	0.83[ASN][1000 genomes]
rs11723829	0.83[ASN][1000 genomes]
rs11732135	0.90[EUR][1000 genomes]
rs11735147	0.90[EUR][1000 genomes]
rs11736547	0.83[ASN][1000 genomes]
rs12502193	0.81[ASN][1000 genomes]
rs12504419	0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs12508997	0.83[ASN][1000 genomes]
rs12509001	0.83[ASN][1000 genomes]
rs12512914	0.83[ASN][1000 genomes]
rs12647550	0.89[JPT][hapmap]
rs12647626	0.89[JPT][hapmap]
rs13101381	0.82[ASN][1000 genomes]
rs13107341	0.90[EUR][1000 genomes]
rs13107386	0.83[ASN][1000 genomes]
rs13107479	0.83[ASN][1000 genomes]
rs13111315	0.83[ASN][1000 genomes]
rs13138236	0.83[ASN][1000 genomes]
rs13141720	0.82[ASN][1000 genomes]
rs1397432	0.86[EUR][1000 genomes]
rs1510666	0.84[EUR][1000 genomes]
rs1510668	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1510671	0.84[EUR][1000 genomes]
rs1510675	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1510677	0.85[EUR][1000 genomes]
rs1510678	0.86[EUR][1000 genomes]
rs1510694	0.88[EUR][1000 genomes]
rs17011876	0.83[ASN][1000 genomes]
rs17011922	0.81[ASN][1000 genomes]
rs17209401	0.87[EUR][1000 genomes]
rs17209459	0.88[EUR][1000 genomes]
rs17210835	0.82[EUR][1000 genomes]
rs17274168	0.84[EUR][1000 genomes]
rs17274880	0.87[EUR][1000 genomes]
rs1848932	0.86[EUR][1000 genomes]
rs1877070	0.86[EUR][1000 genomes]
rs1877072	0.83[ASN][1000 genomes]
rs1995903	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1995906	0.82[ASN][1000 genomes]
rs1995907	0.81[ASN][1000 genomes]
rs2048378	0.84[EUR][1000 genomes]
rs2048379	0.83[ASN][1000 genomes]
rs2221774	0.83[ASN][1000 genomes]
rs2391117	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2391120	0.90[EUR][1000 genomes]
rs2391124	0.83[EUR][1000 genomes]
rs2893204	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34597806	0.83[ASN][1000 genomes]
rs34872217	0.81[ASN][1000 genomes]
rs4345195	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4373175	0.90[EUR][1000 genomes]
rs4391044	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4833361	0.90[EUR][1000 genomes]
rs4833362	0.83[ASN][1000 genomes]
rs4833363	0.90[EUR][1000 genomes]
rs4834157	0.91[EUR][1000 genomes]
rs5011815	0.87[EUR][1000 genomes]
rs55665999	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55926587	0.82[EUR][1000 genomes]
rs56305646	0.84[EUR][1000 genomes]
rs57018884	0.86[EUR][1000 genomes]
rs60444403	0.83[EUR][1000 genomes]
rs62323516	0.83[EUR][1000 genomes]
rs62324071	0.82[EUR][1000 genomes]
rs62324072	0.81[EUR][1000 genomes]
rs6534591	0.86[EUR][1000 genomes]
rs6534592	0.81[ASN][1000 genomes]
rs6534593	0.91[EUR][1000 genomes]
rs6813695	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs6816030	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6824020	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6824257	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6828035	0.86[EUR][1000 genomes]
rs6837327	0.84[ASN][1000 genomes]
rs6845689	0.89[JPT][hapmap]
rs6848070	0.83[ASN][1000 genomes]
rs7654524	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7657229	0.86[EUR][1000 genomes]
rs7685181	0.83[ASN][1000 genomes]
rs7689620	0.86[EUR][1000 genomes]
rs7695040	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9307592	0.90[EUR][1000 genomes]
rs9942226	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428773	chr4:127760014-127913973	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830055	chr4:127794875-127993821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv879913	chr4:127844803-127948196	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127873000-127879600	Active TSS	K562	blood
2	chr4:127875600-127879000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:127876000-127877800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr4:127876000-127879200	Weak transcription	Right Atrium	heart
5	chr4:127876400-127877800	Enhancers	Fetal Muscle Trunk	muscle
6	chr4:127876600-127877800	ZNF genes & repeats	Placenta	Placenta
7	chr4:127876600-127878000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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