Variant report

Variant	rs1510675
Chromosome Location	chr4:127826682-127826683
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:127825918..127828115-chr4:127829193..127830760,2	MCF-7	breast:

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10000064	0.94[ASN][1000 genomes]
rs10002741	0.88[AFR][1000 genomes]
rs10012049	0.85[EUR][1000 genomes]
rs11098902	0.83[ASN][1000 genomes]
rs11732135	0.87[EUR][1000 genomes]
rs11735147	0.87[EUR][1000 genomes]
rs12503377	0.81[ASN][1000 genomes]
rs13107341	0.87[EUR][1000 genomes]
rs13142376	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1397432	0.90[EUR][1000 genomes]
rs1510666	0.90[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1510668	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1510669	0.83[ASN][1000 genomes]
rs1510671	0.94[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1510672	0.83[ASN][1000 genomes]
rs1510677	0.90[EUR][1000 genomes]
rs1510678	0.91[EUR][1000 genomes]
rs1510694	0.87[EUR][1000 genomes]
rs1588463	0.83[ASN][1000 genomes]
rs17209401	0.86[EUR][1000 genomes]
rs17209459	0.87[EUR][1000 genomes]
rs17274168	0.91[EUR][1000 genomes]
rs17274880	0.86[EUR][1000 genomes]
rs1848932	0.91[EUR][1000 genomes]
rs1877066	0.81[ASN][1000 genomes]
rs1877067	0.83[ASN][1000 genomes]
rs1877069	0.94[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1877070	0.91[EUR][1000 genomes]
rs1995903	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2048378	0.92[EUR][1000 genomes]
rs2391117	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2391120	0.87[EUR][1000 genomes]
rs2391124	0.91[EUR][1000 genomes]
rs2893204	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4303993	0.83[ASN][1000 genomes]
rs4345195	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4373175	0.87[EUR][1000 genomes]
rs4391044	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4833358	0.83[ASN][1000 genomes]
rs4833361	0.87[EUR][1000 genomes]
rs4833363	0.86[EUR][1000 genomes]
rs4834152	0.81[ASN][1000 genomes]
rs4834157	0.86[EUR][1000 genomes]
rs5011815	0.86[EUR][1000 genomes]
rs56305646	0.92[EUR][1000 genomes]
rs57018884	0.85[EUR][1000 genomes]
rs60444403	0.91[EUR][1000 genomes]
rs62323516	0.91[EUR][1000 genomes]
rs6534591	0.89[EUR][1000 genomes]
rs6534593	0.84[EUR][1000 genomes]
rs6813695	0.86[EUR][1000 genomes]
rs6815811	0.83[ASN][1000 genomes]
rs6816030	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6824020	0.97[ASN][1000 genomes]
rs6824257	0.97[ASN][1000 genomes]
rs6828035	0.90[EUR][1000 genomes]
rs6831218	0.84[ASN][1000 genomes]
rs6844304	0.81[ASN][1000 genomes]
rs6848548	0.84[ASN][1000 genomes]
rs6856247	0.83[ASN][1000 genomes]
rs71633717	0.81[ASN][1000 genomes]
rs7654524	0.87[EUR][1000 genomes]
rs7655752	0.83[ASN][1000 genomes]
rs7656539	0.83[ASN][1000 genomes]
rs7657229	0.91[EUR][1000 genomes]
rs7678163	0.83[ASN][1000 genomes]
rs7679139	0.83[ASN][1000 genomes]
rs7689620	0.91[EUR][1000 genomes]
rs7695040	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7698395	0.83[ASN][1000 genomes]
rs9307592	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879911	chr4:127646765-127835677	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv428773	chr4:127760014-127913973	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv830055	chr4:127794875-127993821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127820600-127830000	Weak transcription	Fetal Brain Male	brain
2	chr4:127825400-127827600	Weak transcription	K562	blood

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