Variant report

Variant	rs6816030
Chromosome Location	chr4:127813836-127813837
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10000064	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10002741	0.98[AFR][1000 genomes]
rs10012049	0.85[EUR][1000 genomes]
rs11098902	0.81[ASN][1000 genomes]
rs11732135	0.87[EUR][1000 genomes]
rs11735147	0.87[EUR][1000 genomes]
rs13107341	0.87[EUR][1000 genomes]
rs13110529	0.84[ASN][1000 genomes]
rs13115066	0.83[ASN][1000 genomes]
rs13124612	0.80[ASN][1000 genomes]
rs13142376	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13151401	0.80[ASN][1000 genomes]
rs1397432	0.90[EUR][1000 genomes]
rs1510666	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs1510668	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1510669	0.81[ASN][1000 genomes]
rs1510671	0.95[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1510672	0.81[ASN][1000 genomes]
rs1510675	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1510677	0.90[EUR][1000 genomes]
rs1510678	0.91[EUR][1000 genomes]
rs1510694	0.86[EUR][1000 genomes]
rs1588463	0.81[ASN][1000 genomes]
rs17209401	0.84[EUR][1000 genomes]
rs17209459	0.86[EUR][1000 genomes]
rs17274168	0.91[EUR][1000 genomes]
rs17274880	0.85[EUR][1000 genomes]
rs1848932	0.91[EUR][1000 genomes]
rs1877067	0.81[ASN][1000 genomes]
rs1877069	0.94[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs1877070	0.91[EUR][1000 genomes]
rs1995903	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2048378	0.91[EUR][1000 genomes]
rs2391117	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2391120	0.87[EUR][1000 genomes]
rs2391124	0.92[EUR][1000 genomes]
rs2893204	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4303993	0.81[ASN][1000 genomes]
rs4345195	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4373175	0.87[EUR][1000 genomes]
rs4391044	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4554089	0.84[ASN][1000 genomes]
rs4833358	0.81[ASN][1000 genomes]
rs4833361	0.87[EUR][1000 genomes]
rs4833363	0.84[EUR][1000 genomes]
rs4834153	0.80[ASN][1000 genomes]
rs4834157	0.86[EUR][1000 genomes]
rs5011815	0.85[EUR][1000 genomes]
rs56305646	0.91[EUR][1000 genomes]
rs57018884	0.84[EUR][1000 genomes]
rs60444403	0.92[EUR][1000 genomes]
rs62323516	0.92[EUR][1000 genomes]
rs6534591	0.90[EUR][1000 genomes]
rs6534593	0.84[EUR][1000 genomes]
rs6813695	0.86[EUR][1000 genomes]
rs6815811	0.81[ASN][1000 genomes]
rs6824020	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6824257	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6828035	0.90[EUR][1000 genomes]
rs6832255	0.81[ASN][1000 genomes]
rs6856247	0.81[ASN][1000 genomes]
rs7654524	0.87[EUR][1000 genomes]
rs7655752	0.81[ASN][1000 genomes]
rs7656539	0.81[ASN][1000 genomes]
rs7657229	0.91[EUR][1000 genomes]
rs7677910	0.81[ASN][1000 genomes]
rs7678163	0.81[ASN][1000 genomes]
rs7679139	0.81[ASN][1000 genomes]
rs7689620	0.91[EUR][1000 genomes]
rs7695040	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7698395	0.81[ASN][1000 genomes]
rs9307592	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879911	chr4:127646765-127835677	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv428773	chr4:127760014-127913973	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv830055	chr4:127794875-127993821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127803200-127815600	Weak transcription	K562	blood
2	chr4:127812000-127819000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr4:127812400-127820000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr4:127812600-127817000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr4:127812600-127819600	Weak transcription	NHDF-Ad	bronchial
6	chr4:127812800-127818600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links