Variant report

Variant	rs6824257
Chromosome Location	chr4:127811482-127811483
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:127806872..127808434-chr4:127810720..127812309,2	K562	blood:
2	chr4:127810077..127811688-chr4:127883020..127885703,2	K562	blood:
3	chr4:127809656..127812090-chr4:127818382..127821149,2	K562	blood:
4	chr4:127806872..127808749-chr4:127810720..127812477,2	K562	blood:
5	chr4:127809921..127811534-chr4:127814777..127816891,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10000064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10002741	0.91[EUR][1000 genomes]
rs11098902	0.83[ASN][1000 genomes]
rs12503377	0.84[ASN][1000 genomes]
rs13115066	0.81[ASN][1000 genomes]
rs13142376	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1510668	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1510669	0.83[ASN][1000 genomes]
rs1510672	0.83[ASN][1000 genomes]
rs1510675	0.97[ASN][1000 genomes]
rs1588463	0.83[ASN][1000 genomes]
rs17273728	0.91[EUR][1000 genomes]
rs1877066	0.81[ASN][1000 genomes]
rs1877067	0.83[ASN][1000 genomes]
rs1960849	0.81[EUR][1000 genomes]
rs1995903	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2391117	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2893204	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4303993	0.83[ASN][1000 genomes]
rs4345195	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4391044	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4833358	0.83[ASN][1000 genomes]
rs4834152	0.84[ASN][1000 genomes]
rs6534591	0.93[AFR][1000 genomes]
rs6815811	0.83[ASN][1000 genomes]
rs6816030	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6824020	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6831218	0.81[ASN][1000 genomes]
rs6844304	0.81[ASN][1000 genomes]
rs6848548	0.81[ASN][1000 genomes]
rs6856247	0.83[ASN][1000 genomes]
rs71633717	0.81[ASN][1000 genomes]
rs7655752	0.83[ASN][1000 genomes]
rs7656539	0.83[ASN][1000 genomes]
rs7678163	0.83[ASN][1000 genomes]
rs7679139	0.83[ASN][1000 genomes]
rs7695040	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7698395	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879911	chr4:127646765-127835677	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv428773	chr4:127760014-127913973	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv830055	chr4:127794875-127993821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127794000-127812200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:127803200-127815600	Weak transcription	K562	blood
3	chr4:127808600-127812000	Weak transcription	NHLF	lung
4	chr4:127809800-127812400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:127810000-127812000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr4:127810000-127812000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr4:127810800-127812200	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr4:127810800-127812200	Weak transcription	Osteobl	bone
9	chr4:127811000-127812000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr4:127811200-127812800	Enhancers	Fetal Stomach	stomach
11	chr4:127811400-127812600	Enhancers	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links