Variant report

Variant	rs71633717
Chromosome Location	chr4:127813218-127813219
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs11098902	0.96[ASN][1000 genomes]
rs11098905	0.82[AMR][1000 genomes]
rs11724587	0.81[AMR][1000 genomes]
rs11724702	0.81[AMR][1000 genomes]
rs11731527	0.81[AMR][1000 genomes]
rs11732835	0.80[AMR][1000 genomes]
rs11942125	0.82[AMR][1000 genomes]
rs12498197	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12503377	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12504419	0.83[AMR][1000 genomes]
rs12512914	0.83[AMR][1000 genomes]
rs13104202	0.83[AMR][1000 genomes]
rs13107479	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs13110529	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13114331	0.84[AMR][1000 genomes]
rs13115066	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13121117	0.85[AMR][1000 genomes]
rs13124612	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs13125496	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs13129761	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13131302	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13135503	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs13139253	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13141430	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13148797	0.83[AMR][1000 genomes]
rs13149848	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13151401	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1503627	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1510665	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1510668	0.82[ASN][1000 genomes]
rs1510669	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1510672	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1510675	0.81[ASN][1000 genomes]
rs1588463	0.96[ASN][1000 genomes]
rs1604721	0.83[AMR][1000 genomes]
rs1604722	0.83[AMR][1000 genomes]
rs17011777	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17011779	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1877066	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1877067	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1912521	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1995903	0.82[ASN][1000 genomes]
rs2048379	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2134643	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2221774	0.81[ASN][1000 genomes]
rs2391097	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34597806	0.84[AMR][1000 genomes]
rs4270599	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4303993	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4365742	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4397007	0.81[AMR][1000 genomes]
rs4492022	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4554089	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4599427	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4639084	0.81[AMR][1000 genomes]
rs4833357	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs4833358	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4833360	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4834148	0.86[AMR][1000 genomes]
rs4834151	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4834152	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4834153	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4834154	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4834155	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4834156	0.83[AMR][1000 genomes]
rs6815811	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6821148	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6822430	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6824020	0.81[ASN][1000 genomes]
rs6824257	0.81[ASN][1000 genomes]
rs6831218	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6832255	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6837327	0.80[ASN][1000 genomes]
rs6844304	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6848548	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6856247	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7439947	0.83[AMR][1000 genomes]
rs7655752	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7656539	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7674389	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7677910	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7678163	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7679139	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7698395	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879911	chr4:127646765-127835677	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv428773	chr4:127760014-127913973	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv830055	chr4:127794875-127993821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127803200-127815600	Weak transcription	K562	blood
2	chr4:127812000-127819000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr4:127812400-127820000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr4:127812600-127817000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr4:127812600-127819600	Weak transcription	NHDF-Ad	bronchial
6	chr4:127812800-127818600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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