Variant report

Variant	rs4834156
Chromosome Location	chr4:127837723-127837724
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:127836489..127839224-chr4:127843135..127845603,3	K562	blood:
2	chr4:127829570..127832511-chr4:127837183..127839221,2	K562	blood:
3	chr4:127834827..127837807-chr4:127876060..127878431,3	K562	blood:
4	chr4:127815806..127818059-chr4:127836470..127838951,2	K562	blood:
5	chr4:127837336..127840595-chr4:127841845..127844846,5	K562	blood:
6	chr4:127836337..127838086-chr4:127874738..127876500,2	K562	blood:

Extended variants
information (count: 109 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs10446736	0.82[EUR][1000 genomes]
rs11098902	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11098905	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11721464	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11723829	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11724587	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11724702	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11731527	0.86[AMR][1000 genomes]
rs11732835	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11736547	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11942125	0.87[AMR][1000 genomes]
rs12498197	0.89[AMR][1000 genomes]
rs12503377	0.89[AMR][1000 genomes]
rs12504419	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12508997	0.80[AMR][1000 genomes]
rs12511029	0.82[AMR][1000 genomes]
rs12512914	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13101381	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13104202	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13107386	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13107479	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13110529	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13111315	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13114288	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13114331	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13115066	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13121117	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13123992	0.81[AMR][1000 genomes]
rs13124612	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13125496	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13129761	0.87[AMR][1000 genomes]
rs13131302	0.89[AMR][1000 genomes]
rs13135503	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13138236	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13139253	0.89[AMR][1000 genomes]
rs13141430	0.84[AMR][1000 genomes]
rs13141720	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13142058	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13148797	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13149848	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13151401	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1472702	0.81[EUR][1000 genomes]
rs1503627	0.89[AMR][1000 genomes]
rs1503632	0.82[EUR][1000 genomes]
rs1503634	0.82[EUR][1000 genomes]
rs1510665	0.83[AMR][1000 genomes]
rs1510669	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1510672	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1588463	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1604721	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1604722	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16997944	0.82[EUR][1000 genomes]
rs17011777	0.89[AMR][1000 genomes]
rs17011779	0.89[AMR][1000 genomes]
rs17011876	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1877066	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1877067	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1877072	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1912521	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1995906	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1995907	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2048379	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2134643	0.89[AMR][1000 genomes]
rs2221774	0.84[AMR][1000 genomes]
rs2391097	0.89[AMR][1000 genomes]
rs34597806	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4270599	0.83[AMR][1000 genomes]
rs4303993	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4365742	0.83[AMR][1000 genomes]
rs4397007	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4492022	0.83[AMR][1000 genomes]
rs4554089	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4599427	0.85[AMR][1000 genomes]
rs4639084	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4833357	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4833358	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4833360	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4833362	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4834148	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4834151	0.87[AMR][1000 genomes]
rs4834152	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4834153	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4834154	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4834155	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56021645	0.81[AMR][1000 genomes]
rs6534592	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6815811	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6821148	0.83[AMR][1000 genomes]
rs6822430	0.86[AMR][1000 genomes]
rs6831218	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6832255	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6837327	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6844304	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6848070	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6848548	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6856247	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71633717	0.83[AMR][1000 genomes]
rs7439947	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7655752	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7656539	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7674389	0.86[AMR][1000 genomes]
rs7677910	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7678163	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7679139	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7685181	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7698395	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9942226	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428773	chr4:127760014-127913973	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830055	chr4:127794875-127993821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127836600-127837800	Enhancers	Fetal Brain Male	brain
2	chr4:127836600-127838000	Enhancers	Colon Smooth Muscle	Colon
3	chr4:127836800-127838200	Enhancers	Fetal Muscle Leg	muscle
4	chr4:127837000-127838400	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr4:127837000-127838400	Enhancers	Adipose Nuclei	Adipose
6	chr4:127837000-127838400	Active TSS	K562	blood
7	chr4:127837000-127838600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr4:127837000-127838600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr4:127837200-127838000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr4:127837200-127838000	Enhancers	Brain Hippocampus Middle	brain
11	chr4:127837200-127838200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr4:127837200-127838200	Active TSS	Aorta	Aorta
13	chr4:127837200-127838200	Active TSS	Fetal Brain Female	brain
14	chr4:127837200-127838400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr4:127837200-127838400	Enhancers	Fetal Stomach	stomach
16	chr4:127837200-127838400	Flanking Active TSS	NHDF-Ad	bronchial
17	chr4:127837200-127838600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr4:127837400-127837800	Enhancers	NHEK	skin
19	chr4:127837400-127838000	Enhancers	Brain Angular Gyrus	brain
20	chr4:127837400-127838000	Enhancers	Rectal Smooth Muscle	rectum
21	chr4:127837400-127838200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr4:127837400-127838400	Flanking Active TSS	Osteobl	bone
23	chr4:127837600-127837800	Enhancers	Brain Germinal Matrix	brain
24	chr4:127837600-127837800	Enhancers	HSMM	muscle
25	chr4:127837600-127838000	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr4:127837600-127838000	Active TSS	Duodenum Smooth Muscle	Duodenum
27	chr4:127837600-127838200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
28	chr4:127837600-127838200	Active TSS	Ovary	ovary
29	chr4:127837600-127838200	Flanking Active TSS	NH-A	brain
30	chr4:127837600-127838200	Flanking Active TSS	NHLF	lung
31	chr4:127837600-127838400	Flanking Active TSS	Fetal Lung	lung
32	chr4:127837600-127838400	Enhancers	HMEC	breast
33	chr4:127837600-127838800	Enhancers	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links