Variant report

Variant	rs13123992
Chromosome Location	chr4:127894133-127894134
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs10014196	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10016117	0.84[CEU][hapmap]
rs1021062	0.82[EUR][1000 genomes]
rs11098905	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11098911	0.82[EUR][1000 genomes]
rs1155256	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11721464	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11723741	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11723829	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11734026	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11736547	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12502193	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12504419	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12508997	0.91[ASN][1000 genomes]
rs12509001	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12510422	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12512914	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12647550	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs12647626	0.88[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.87[TSI][hapmap]
rs13101381	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13101547	0.82[EUR][1000 genomes]
rs13107386	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs13107479	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13110529	0.83[AMR][1000 genomes]
rs13111315	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13124612	0.83[AMR][1000 genomes]
rs13125496	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs13138236	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13141720	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13142058	0.84[ASN][1000 genomes]
rs13142376	0.89[JPT][hapmap]
rs13149848	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs13151401	0.84[AMR][1000 genomes]
rs1397433	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1510669	0.83[AMR][1000 genomes]
rs1510672	0.83[AMR][1000 genomes]
rs1510680	0.82[EUR][1000 genomes]
rs1533089	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1567491	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17011876	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17011922	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17011977	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1877066	0.83[AMR][1000 genomes]
rs1877067	0.84[AMR][1000 genomes]
rs1877072	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1912521	0.81[AMR][1000 genomes]
rs1995904	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1995906	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1995907	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2048379	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2219924	0.82[EUR][1000 genomes]
rs2221774	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34597806	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34872217	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4146424	0.81[EUR][1000 genomes]
rs4303993	0.83[AMR][1000 genomes]
rs4554089	0.83[AMR][1000 genomes]
rs4833358	0.83[AMR][1000 genomes]
rs4833360	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4833362	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4833366	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4834153	0.83[AMR][1000 genomes]
rs4834154	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4834155	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4834156	0.81[AMR][1000 genomes]
rs4834161	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56280971	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60923968	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6534592	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67251456	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6814753	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6815811	0.83[AMR][1000 genomes]
rs6831218	0.84[AMR][1000 genomes]
rs6832255	0.82[AMR][1000 genomes]
rs6833994	0.82[EUR][1000 genomes]
rs6834065	0.82[EUR][1000 genomes]
rs6837327	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6844304	0.83[AMR][1000 genomes]
rs6845689	0.88[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.88[TSI][hapmap]
rs6848070	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6848548	0.84[AMR][1000 genomes]
rs6856247	0.83[AMR][1000 genomes]
rs7655752	0.83[AMR][1000 genomes]
rs7656539	0.84[AMR][1000 genomes]
rs7667742	0.84[EUR][1000 genomes]
rs7678163	0.83[AMR][1000 genomes]
rs7679139	0.85[AMR][1000 genomes]
rs7680252	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7685181	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7698395	0.83[AMR][1000 genomes]
rs925374	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs989212	0.82[EUR][1000 genomes]
rs9942226	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs997404	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428773	chr4:127760014-127913973	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830055	chr4:127794875-127993821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv879913	chr4:127844803-127948196	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127891200-127898200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr4:127891400-127894200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr4:127892600-127898600	Weak transcription	K562	blood

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