Variant report

Variant	rs13101547
Chromosome Location	chr4:127887839-127887840
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10014196	0.88[EUR][1000 genomes]
rs10016117	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1155256	0.95[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs12502193	0.89[EUR][1000 genomes]
rs13123992	0.82[EUR][1000 genomes]
rs1397433	0.82[EUR][1000 genomes]
rs1510680	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1533089	0.85[EUR][1000 genomes]
rs1567491	0.88[EUR][1000 genomes]
rs17011922	0.93[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs1995904	0.81[EUR][1000 genomes]
rs2221774	0.82[EUR][1000 genomes]
rs34872217	0.92[EUR][1000 genomes]
rs60923968	0.83[EUR][1000 genomes]
rs67251456	0.80[EUR][1000 genomes]
rs6814753	0.81[EUR][1000 genomes]
rs7667742	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs925374	0.81[EUR][1000 genomes]
rs997404	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428773	chr4:127760014-127913973	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830055	chr4:127794875-127993821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv879913	chr4:127844803-127948196	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127883000-127892400	Weak transcription	K562	blood
2	chr4:127887800-127889000	Weak transcription	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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