Variant report

Variant	rs2221774
Chromosome Location	chr4:127883535-127883536
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:127882715..127885766-chr4:127890453..127894088,4	K562	blood:
2	chr4:127882427..127885134-chr4:127887515..127889574,2	K562	blood:
3	chr4:127881584..127884044-chr4:127886785..127888817,3	K562	blood:
4	chr4:127810077..127811688-chr4:127883020..127885703,2	K562	blood:

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs10014196	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10016117	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs11098902	0.81[ASN][1000 genomes]
rs11098905	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1155256	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11721464	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11723741	0.84[ASN][1000 genomes]
rs11723829	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11736547	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12502193	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12503377	0.81[ASN][1000 genomes]
rs12504419	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12508997	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12509001	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12510422	0.88[ASN][1000 genomes]
rs12512914	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12647550	0.92[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs12647626	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs13101381	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13101547	0.82[EUR][1000 genomes]
rs13107386	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13107479	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13110529	0.86[AMR][1000 genomes]
rs13111315	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13123992	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13124612	0.86[AMR][1000 genomes]
rs13125496	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13135503	0.81[AMR][1000 genomes]
rs13138236	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13141720	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13142058	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13142376	0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs13149848	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13151401	0.88[AMR][1000 genomes]
rs1397433	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1510669	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1510672	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1510680	0.82[EUR][1000 genomes]
rs1533089	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1567491	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1588463	0.81[ASN][1000 genomes]
rs17011876	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17011922	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17011977	0.88[ASN][1000 genomes]
rs1877066	0.86[AMR][1000 genomes]
rs1877067	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1877072	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1912521	0.84[AMR][1000 genomes]
rs1995904	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1995906	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1995907	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2048379	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2391117	0.82[ASN][1000 genomes]
rs2893204	0.82[ASN][1000 genomes]
rs34597806	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34872217	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4303993	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4345195	0.82[ASN][1000 genomes]
rs4391044	0.80[ASN][1000 genomes]
rs4554089	0.86[AMR][1000 genomes]
rs4833357	0.81[AMR][1000 genomes]
rs4833358	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4833360	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4833362	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4834148	0.81[AMR][1000 genomes]
rs4834152	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4834153	0.86[AMR][1000 genomes]
rs4834154	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4834155	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4834156	0.84[AMR][1000 genomes]
rs4834161	0.87[ASN][1000 genomes]
rs60923968	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6534592	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67251456	0.88[ASN][1000 genomes]
rs6814753	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6815811	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6831218	0.88[AMR][1000 genomes]
rs6832255	0.85[AMR][1000 genomes]
rs6837327	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6844304	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6845689	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs6848070	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6848548	0.88[AMR][1000 genomes]
rs6856247	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs71633717	0.81[ASN][1000 genomes]
rs7655752	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7656539	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7667742	0.81[EUR][1000 genomes]
rs7677910	0.81[AMR][1000 genomes]
rs7678163	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7679139	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7685181	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7698395	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs925374	0.88[ASN][1000 genomes]
rs9942226	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs997404	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428773	chr4:127760014-127913973	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830055	chr4:127794875-127993821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv879913	chr4:127844803-127948196	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127879600-127885600	Weak transcription	Fetal Brain Male	brain
2	chr4:127883000-127892400	Weak transcription	K562	blood

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