Variant report

Variant	rs1155256
Chromosome Location	chr4:127890374-127890375
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:127875427..127880054-chr4:127888874..127892075,5	K562	blood:
2	chr4:127860441..127862687-chr4:127888843..127890757,2	K562	blood:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10014196	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10016117	0.84[CEU][hapmap]
rs11098905	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11721464	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11723741	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11723829	0.94[ASN][1000 genomes]
rs11734026	0.81[EUR][1000 genomes]
rs11736547	0.94[ASN][1000 genomes]
rs12502193	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12504419	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12508997	0.94[ASN][1000 genomes]
rs12509001	0.94[ASN][1000 genomes]
rs12510422	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12512914	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12647550	0.89[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs12647626	0.88[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs13101381	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13101547	0.95[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs13107386	0.94[ASN][1000 genomes]
rs13107479	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13111315	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13123992	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13125496	0.83[ASN][1000 genomes]
rs13138236	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13141720	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13142058	0.87[ASN][1000 genomes]
rs13142376	0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs13149848	0.84[ASN][1000 genomes]
rs1397433	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1510680	0.98[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1533089	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1567491	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17011876	0.94[ASN][1000 genomes]
rs17011922	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17011977	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1877072	0.94[ASN][1000 genomes]
rs1995904	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1995906	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1995907	0.92[ASN][1000 genomes]
rs2048379	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2221774	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34597806	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34872217	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4833360	0.84[ASN][1000 genomes]
rs4833362	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4834154	0.84[ASN][1000 genomes]
rs4834155	0.84[ASN][1000 genomes]
rs4834161	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60923968	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6534592	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67251456	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6814753	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6815811	0.81[ASN][1000 genomes]
rs6837327	0.95[ASN][1000 genomes]
rs6845689	0.88[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs6848070	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7667742	0.95[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7685181	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs925374	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9942226	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs997404	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428773	chr4:127760014-127913973	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830055	chr4:127794875-127993821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv879913	chr4:127844803-127948196	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127883000-127892400	Weak transcription	K562	blood
2	chr4:127889200-127891000	Enhancers	Colon Smooth Muscle	Colon
3	chr4:127889800-127891200	Weak transcription	Aorta	Aorta
4	chr4:127890000-127891400	Enhancers	Fetal Stomach	stomach
5	chr4:127890200-127890800	Weak transcription	Fetal Muscle Leg	muscle
6	chr4:127890200-127891400	Enhancers	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links