Variant report

Variant	rs997404
Chromosome Location	chr4:127896387-127896388
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:127894144..127897160-chr4:127898666..127901470,3	K562	blood:
2	chr4:127880049..127882565-chr4:127896174..127898641,2	K562	blood:
3	chr4:127890829..127893804-chr4:127895608..127897503,2	K562	blood:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10014196	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10016117	0.84[CEU][hapmap]
rs11098905	0.89[ASN][1000 genomes]
rs1155256	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11721464	0.90[ASN][1000 genomes]
rs11723741	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11723829	0.90[ASN][1000 genomes]
rs11734026	0.81[ASN][1000 genomes]
rs11736547	0.90[ASN][1000 genomes]
rs12502193	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12504419	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12508997	0.90[ASN][1000 genomes]
rs12509001	0.90[ASN][1000 genomes]
rs12510422	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12512914	0.90[ASN][1000 genomes]
rs12647550	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs12647626	0.88[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.85[TSI][hapmap]
rs13101381	0.88[ASN][1000 genomes]
rs13101547	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs13107386	0.90[ASN][1000 genomes]
rs13107479	0.88[ASN][1000 genomes]
rs13111315	0.90[ASN][1000 genomes]
rs13123992	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13138236	0.90[ASN][1000 genomes]
rs13141720	0.89[ASN][1000 genomes]
rs13142058	0.83[ASN][1000 genomes]
rs13142376	0.89[JPT][hapmap]
rs1397433	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1510680	0.90[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1533089	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1567491	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17011876	0.90[ASN][1000 genomes]
rs17011922	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17011977	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1877072	0.90[ASN][1000 genomes]
rs1995904	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1995906	0.89[ASN][1000 genomes]
rs1995907	0.88[ASN][1000 genomes]
rs2048379	0.88[ASN][1000 genomes]
rs2221774	0.94[ASN][1000 genomes]
rs34597806	0.90[ASN][1000 genomes]
rs34872217	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4833360	0.81[ASN][1000 genomes]
rs4833362	0.90[ASN][1000 genomes]
rs4833366	0.81[ASN][1000 genomes]
rs4834154	0.81[ASN][1000 genomes]
rs4834155	0.81[ASN][1000 genomes]
rs4834161	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56280971	0.81[ASN][1000 genomes]
rs60923968	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6534592	0.88[ASN][1000 genomes]
rs67251456	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6814753	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6837327	0.91[ASN][1000 genomes]
rs6845689	0.88[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap]
rs6848070	0.90[ASN][1000 genomes]
rs7667742	0.93[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7680252	0.81[ASN][1000 genomes]
rs7685181	0.90[ASN][1000 genomes]
rs925374	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9942226	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428773	chr4:127760014-127913973	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830055	chr4:127794875-127993821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv879913	chr4:127844803-127948196	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127891200-127898200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr4:127892600-127898600	Weak transcription	K562	blood
3	chr4:127895400-127897600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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