Variant report

Variant	rs56280971
Chromosome Location	chr4:127960721-127960722
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10014196	0.86[ASN][1000 genomes]
rs1021062	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11098911	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11723741	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11734026	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12510422	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12643562	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12646249	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13123992	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1397433	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1533089	0.81[EUR][1000 genomes]
rs1567491	0.84[ASN][1000 genomes]
rs17011977	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1995904	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2219924	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4146424	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4833366	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4834161	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60923968	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67251456	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6814753	0.83[EUR][1000 genomes]
rs6833994	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6834065	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7680252	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs925374	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs989212	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs997404	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830055	chr4:127794875-127993821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127958400-127961200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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