Variant report

Variant	rs11098911
Chromosome Location	chr4:127978518-127978519
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10014196	0.82[ASN][1000 genomes]
rs1021062	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11723741	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11734026	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12504419	0.91[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap]
rs12510422	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12643562	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12646249	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12647550	0.92[CEU][hapmap];0.92[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs12647626	0.87[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs13123992	0.82[EUR][1000 genomes]
rs13142376	0.85[JPT][hapmap]
rs1397433	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1567491	0.81[ASN][1000 genomes]
rs17011977	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1995904	0.84[ASN][1000 genomes]
rs2219924	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4146424	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4833366	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4834161	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56280971	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60923968	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67251456	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6814753	0.81[EUR][1000 genomes]
rs6833994	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6834065	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6845689	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs7680252	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs925374	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs989212	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830055	chr4:127794875-127993821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127967600-127982000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:127977400-127979200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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