Variant report

Variant	rs1021062
Chromosome Location	chr4:127969058-127969059
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:127963640..127966390-chr4:127966752..127969246,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10014196	0.82[ASN][1000 genomes]
rs11098911	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11723741	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11734026	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12504419	0.86[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs12510422	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12643562	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12646249	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12647550	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs12647626	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs13123992	0.82[EUR][1000 genomes]
rs13142376	0.88[JPT][hapmap]
rs1397433	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1567491	0.81[ASN][1000 genomes]
rs17011977	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1995904	0.84[ASN][1000 genomes]
rs2219924	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4146424	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4833366	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4834161	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56280971	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60923968	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67251456	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6814753	0.81[EUR][1000 genomes]
rs6833994	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6834065	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6845689	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7680252	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs925374	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs989212	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830055	chr4:127794875-127993821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127965200-127970800	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr4:127965800-127971200	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr4:127966000-127971000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr4:127966600-127972800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:127967000-127976200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr4:127967400-127969600	Weak transcription	NH-A	brain
7	chr4:127967400-127969800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr4:127967600-127969600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr4:127967600-127969800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr4:127967600-127970400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr4:127967600-127976600	Weak transcription	NHDF-Ad	bronchial
12	chr4:127967600-127982000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr4:127967800-127970200	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr4:127968000-127969800	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr4:127968400-127969400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr4:127968400-127970400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr4:127968800-127969400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr4:127968800-127969800	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr4:127969000-127969400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr4:127969000-127969800	Weak transcription	HUES6 Cell Line	embryonic stem cell

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