Variant report

Variant	rs60923968
Chromosome Location	chr4:127929882-127929883
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:127929476..127931219-chr4:127932867..127935276,2	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10014196	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1021062	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11098905	0.80[ASN][1000 genomes]
rs11098911	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1155256	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11721464	0.81[ASN][1000 genomes]
rs11723741	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11723829	0.81[ASN][1000 genomes]
rs11734026	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11736547	0.81[ASN][1000 genomes]
rs12502193	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12504419	0.81[ASN][1000 genomes]
rs12508997	0.81[ASN][1000 genomes]
rs12509001	0.81[ASN][1000 genomes]
rs12510422	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12512914	0.81[ASN][1000 genomes]
rs12646249	0.81[EUR][1000 genomes]
rs13101547	0.83[EUR][1000 genomes]
rs13107386	0.81[ASN][1000 genomes]
rs13111315	0.81[ASN][1000 genomes]
rs13123992	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13138236	0.81[ASN][1000 genomes]
rs13141720	0.80[ASN][1000 genomes]
rs1397433	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1510680	0.83[EUR][1000 genomes]
rs1533089	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1567491	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17011876	0.81[ASN][1000 genomes]
rs17011922	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17011977	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1877072	0.81[ASN][1000 genomes]
rs1995904	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1995906	0.81[ASN][1000 genomes]
rs2219924	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2221774	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34597806	0.81[ASN][1000 genomes]
rs34872217	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4146424	0.85[ASN][1000 genomes]
rs4833362	0.81[ASN][1000 genomes]
rs4833366	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4834161	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55665999	0.82[ASN][1000 genomes]
rs56280971	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67251456	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6814753	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6833994	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6834065	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6837327	0.82[ASN][1000 genomes]
rs6848070	0.81[ASN][1000 genomes]
rs7667742	0.86[EUR][1000 genomes]
rs7680252	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7685181	0.81[ASN][1000 genomes]
rs925374	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs989212	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9942226	0.81[ASN][1000 genomes]
rs997404	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830055	chr4:127794875-127993821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv879913	chr4:127844803-127948196	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127928000-127934000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr4:127929000-127933600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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