Variant report

Variant	rs55665999
Chromosome Location	chr4:127934708-127934709
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:127929476..127931219-chr4:127932867..127935276,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1024119	0.87[EUR][1000 genomes]
rs11723741	0.83[ASN][1000 genomes]
rs12500948	0.87[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs12506951	0.86[EUR][1000 genomes]
rs12507172	0.87[EUR][1000 genomes]
rs12512293	0.97[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs13142376	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1397433	0.82[ASN][1000 genomes]
rs1473018	0.87[EUR][1000 genomes]
rs17210317	0.90[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs17210366	0.90[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs17210835	0.99[EUR][1000 genomes]
rs17276043	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs17276448	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs17277345	0.83[EUR][1000 genomes]
rs1912520	0.87[EUR][1000 genomes]
rs1995904	0.80[ASN][1000 genomes]
rs2391117	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2391121	0.97[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs2893204	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4345195	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4391044	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4834160	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs55926587	1.00[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs56049331	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs56080449	0.87[EUR][1000 genomes]
rs56093833	0.84[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs56095322	0.87[EUR][1000 genomes]
rs56166314	0.87[EUR][1000 genomes]
rs60300026	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs60923968	0.82[ASN][1000 genomes]
rs62324061	0.87[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs62324062	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs62324067	0.90[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs62324069	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs62324070	0.93[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs62324071	0.97[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs62324072	0.97[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs62324106	0.87[EUR][1000 genomes]
rs62324478	0.86[EUR][1000 genomes]
rs62333855	0.86[EUR][1000 genomes]
rs62335480	0.84[EUR][1000 genomes]
rs62335482	0.83[EUR][1000 genomes]
rs72678030	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs764329	0.87[EUR][1000 genomes]
rs764330	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830055	chr4:127794875-127993821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv879913	chr4:127844803-127948196	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127933200-127936800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr4:127934000-127934800	Enhancers	Cortex derived primary cultured neurospheres	brain

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