Variant report

Variant	rs4391044
Chromosome Location	chr4:127842534-127842535
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:127837336..127840595-chr4:127841845..127844846,5	K562	blood:

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10000064	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10012049	0.87[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs11098905	0.83[ASN][1000 genomes]
rs11721464	0.83[ASN][1000 genomes]
rs11723829	0.83[ASN][1000 genomes]
rs11732135	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs11735147	0.92[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs11736547	0.83[ASN][1000 genomes]
rs12504419	0.83[ASN][1000 genomes]
rs12508997	0.83[ASN][1000 genomes]
rs12509001	0.83[ASN][1000 genomes]
rs12512914	0.83[ASN][1000 genomes]
rs13101381	0.82[ASN][1000 genomes]
rs13107341	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs13107386	0.83[ASN][1000 genomes]
rs13107479	0.83[ASN][1000 genomes]
rs13111315	0.83[ASN][1000 genomes]
rs13138236	0.83[ASN][1000 genomes]
rs13141720	0.82[ASN][1000 genomes]
rs13142376	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1397432	0.88[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs1510666	0.85[EUR][1000 genomes]
rs1510668	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1510671	0.85[EUR][1000 genomes]
rs1510675	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1510677	0.90[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs1510678	0.88[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs1510694	0.90[EUR][1000 genomes]
rs17011876	0.83[ASN][1000 genomes]
rs17209401	0.88[EUR][1000 genomes]
rs17209459	0.90[EUR][1000 genomes]
rs17210835	0.82[EUR][1000 genomes]
rs17274168	0.85[EUR][1000 genomes]
rs17274880	0.88[EUR][1000 genomes]
rs1848932	0.84[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs1877070	0.88[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs1877072	0.83[ASN][1000 genomes]
rs1995903	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1995906	0.82[ASN][1000 genomes]
rs1995907	0.81[ASN][1000 genomes]
rs2048378	0.85[EUR][1000 genomes]
rs2048379	0.83[ASN][1000 genomes]
rs2221774	0.80[ASN][1000 genomes]
rs2391117	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2391120	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs2391124	0.84[EUR][1000 genomes]
rs2893204	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34597806	0.83[ASN][1000 genomes]
rs4345195	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4373175	0.91[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs4833361	0.91[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs4833362	0.83[ASN][1000 genomes]
rs4833363	0.88[EUR][1000 genomes]
rs4834157	0.90[EUR][1000 genomes]
rs5011815	0.89[EUR][1000 genomes]
rs55665999	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs55926587	0.82[EUR][1000 genomes]
rs56305646	0.85[EUR][1000 genomes]
rs57018884	0.90[EUR][1000 genomes]
rs60444403	0.84[EUR][1000 genomes]
rs62323516	0.84[EUR][1000 genomes]
rs62324071	0.82[EUR][1000 genomes]
rs62324072	0.81[EUR][1000 genomes]
rs6534591	0.85[EUR][1000 genomes]
rs6534593	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs6813695	0.90[EUR][1000 genomes]
rs6816030	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6824020	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6824257	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6828035	0.91[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs6837327	0.81[ASN][1000 genomes]
rs6848070	0.83[ASN][1000 genomes]
rs7654524	0.91[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs7657229	0.87[EUR][1000 genomes]
rs7685181	0.83[ASN][1000 genomes]
rs7689620	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7695040	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9307592	0.89[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs9942226	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428773	chr4:127760014-127913973	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830055	chr4:127794875-127993821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127838400-127860400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:127839400-127844400	Weak transcription	K562	blood

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