Variant report

Variant	rs9307592
Chromosome Location	chr4:127861279-127861280
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:127855901..127858595-chr4:127860559..127863000,3	K562	blood:
2	chr4:127860441..127862687-chr4:127888843..127890757,2	K562	blood:

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10002741	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10012049	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11732135	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11735147	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12500948	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12512293	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13107341	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13142376	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs1397432	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1473018	0.80[ASN][1000 genomes]
rs1510666	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1510668	0.86[EUR][1000 genomes]
rs1510671	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1510675	0.87[EUR][1000 genomes]
rs1510677	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1510678	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1510694	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17209401	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17209459	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17210317	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17210366	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17210835	0.87[ASN][1000 genomes]
rs17273728	0.81[ASN][1000 genomes]
rs17274168	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17274880	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17276043	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17276448	0.89[ASN][1000 genomes]
rs1848932	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1877069	0.84[EUR][1000 genomes]
rs1877070	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1995903	0.86[EUR][1000 genomes]
rs2048378	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2391117	0.98[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs2391120	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2391121	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2391124	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2893204	0.98[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs4345195	0.98[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs4373175	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4391044	0.89[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs4833361	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4833363	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4834157	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4834160	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4834165	0.91[CHB][hapmap]
rs5011815	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55926587	0.87[ASN][1000 genomes]
rs56049331	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56093833	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56095322	0.80[ASN][1000 genomes]
rs56305646	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57018884	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60300026	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60444403	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60662195	0.82[ASN][1000 genomes]
rs62323483	0.82[ASN][1000 genomes]
rs62323516	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62324061	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62324062	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62324067	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62324069	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62324070	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62324071	0.87[ASN][1000 genomes]
rs62324072	0.87[ASN][1000 genomes]
rs62324106	0.80[ASN][1000 genomes]
rs62324478	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6534591	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6534593	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6813695	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6816030	0.87[EUR][1000 genomes]
rs6828035	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72678030	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7654524	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7657229	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7689620	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7695040	0.95[AFR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428773	chr4:127760014-127913973	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830055	chr4:127794875-127993821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv879913	chr4:127844803-127948196	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127857200-127862600	Weak transcription	K562	blood
2	chr4:127859000-127861400	Enhancers	HSMM	muscle
3	chr4:127859200-127861400	Enhancers	NHDF-Ad	bronchial
4	chr4:127859200-127862200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr4:127860800-127861400	Enhancers	HSMMtube	muscle
6	chr4:127860800-127861600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr4:127861200-127864000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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