Variant report

Variant	rs1877069
Chromosome Location	chr4:127820966-127820967
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:127820287..127823577-chr4:127824043..127826421,3	K562	blood:
2	chr4:127809656..127812090-chr4:127818382..127821149,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10002741	0.93[AFR][1000 genomes]
rs10012049	0.82[EUR][1000 genomes]
rs11732135	0.84[EUR][1000 genomes]
rs11735147	0.84[EUR][1000 genomes]
rs13107341	0.84[EUR][1000 genomes]
rs1397432	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1510666	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1510668	0.81[EUR][1000 genomes]
rs1510671	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1510675	0.94[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1510677	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1510678	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1510694	0.83[EUR][1000 genomes]
rs17209401	0.82[EUR][1000 genomes]
rs17209459	0.83[EUR][1000 genomes]
rs17274168	0.88[EUR][1000 genomes]
rs17274880	0.82[EUR][1000 genomes]
rs1848932	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1877070	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1995903	0.81[EUR][1000 genomes]
rs2048378	0.87[EUR][1000 genomes]
rs2391120	0.84[EUR][1000 genomes]
rs2391124	0.89[EUR][1000 genomes]
rs4373175	0.84[EUR][1000 genomes]
rs4833361	0.84[EUR][1000 genomes]
rs4833363	0.82[EUR][1000 genomes]
rs4834157	0.83[EUR][1000 genomes]
rs5011815	0.82[EUR][1000 genomes]
rs56305646	0.87[EUR][1000 genomes]
rs57018884	0.81[EUR][1000 genomes]
rs60444403	0.89[EUR][1000 genomes]
rs62323516	0.89[EUR][1000 genomes]
rs6534591	0.87[EUR][1000 genomes]
rs6534593	0.82[EUR][1000 genomes]
rs6813695	0.83[EUR][1000 genomes]
rs6816030	0.94[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6828035	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7654524	0.83[YRI][hapmap];0.84[EUR][1000 genomes]
rs7657229	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7689620	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7695040	0.81[EUR][1000 genomes]
rs9307592	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879911	chr4:127646765-127835677	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv428773	chr4:127760014-127913973	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv830055	chr4:127794875-127993821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127817600-127821200	ZNF genes & repeats	K562	blood
2	chr4:127818800-127821600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:127819000-127822200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr4:127819400-127821000	Enhancers	Fetal Heart	heart
5	chr4:127819600-127821800	Enhancers	Fetal Muscle Leg	muscle
6	chr4:127819600-127821800	Enhancers	Osteobl	bone
7	chr4:127819600-127822400	Enhancers	NHDF-Ad	bronchial
8	chr4:127819800-127821000	Enhancers	Adipose Nuclei	Adipose
9	chr4:127819800-127821600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr4:127819800-127821600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr4:127819800-127821600	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr4:127819800-127821600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr4:127819800-127821600	Enhancers	HSMMtube	muscle
14	chr4:127819800-127821800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr4:127819800-127821800	Enhancers	NHLF	lung
16	chr4:127820000-127821000	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr4:127820000-127821400	Enhancers	Colon Smooth Muscle	Colon
18	chr4:127820000-127821400	Enhancers	HSMM	muscle
19	chr4:127820000-127821600	Enhancers	Aorta	Aorta
20	chr4:127820000-127821800	Enhancers	Muscle Satellite Cultured Cells	--
21	chr4:127820200-127821000	Enhancers	Brain Germinal Matrix	brain
22	chr4:127820200-127821000	Enhancers	HMEC	breast
23	chr4:127820200-127821400	Enhancers	Stomach Smooth Muscle	stomach
24	chr4:127820200-127821400	Enhancers	NH-A	brain
25	chr4:127820200-127821600	Enhancers	NHEK	skin
26	chr4:127820400-127821600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr4:127820600-127821400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr4:127820600-127830000	Weak transcription	Fetal Brain Male	brain

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