Variant report

Variant	rs62323516
Chromosome Location	chr4:127817772-127817773
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:127815806..127818059-chr4:127836470..127838951,2	K562	blood:

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10002741	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10012049	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11732135	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11735147	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12500948	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12512293	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs13107341	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13142376	0.83[EUR][1000 genomes]
rs1397432	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1510666	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1510668	0.90[EUR][1000 genomes]
rs1510671	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1510675	0.91[EUR][1000 genomes]
rs1510677	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1510678	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1510694	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17209401	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17209459	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17210317	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17210366	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17210835	0.84[ASN][1000 genomes]
rs17273728	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17274168	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17274880	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17276043	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17276448	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1848932	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1877069	0.89[EUR][1000 genomes]
rs1877070	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1995903	0.90[EUR][1000 genomes]
rs2048378	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2391117	0.84[EUR][1000 genomes]
rs2391120	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2391121	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2391124	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2893204	0.86[EUR][1000 genomes]
rs4345195	0.85[EUR][1000 genomes]
rs4373175	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4391044	0.84[EUR][1000 genomes]
rs4833361	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4833363	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4834157	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4834160	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs5011815	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55926587	0.84[ASN][1000 genomes]
rs56049331	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs56093833	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56305646	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57018884	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60300026	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs60444403	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60662195	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs62323476	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs62323479	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs62323481	0.87[AMR][1000 genomes]
rs62323483	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs62324061	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62324062	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62324067	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs62324069	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs62324070	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs62324071	0.84[ASN][1000 genomes]
rs62324072	0.84[ASN][1000 genomes]
rs62324478	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6534591	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6534593	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6813695	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6816030	0.92[EUR][1000 genomes]
rs6828035	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72678030	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7654524	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7657229	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7689620	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7695040	0.90[EUR][1000 genomes]
rs9307592	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879911	chr4:127646765-127835677	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv428773	chr4:127760014-127913973	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv830055	chr4:127794875-127993821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127812000-127819000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr4:127812400-127820000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr4:127812600-127819600	Weak transcription	NHDF-Ad	bronchial
4	chr4:127812800-127818600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr4:127817000-127817800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr4:127817200-127817800	Enhancers	Adipose Nuclei	Adipose
7	chr4:127817400-127819800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr4:127817600-127818000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr4:127817600-127821200	ZNF genes & repeats	K562	blood

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