Variant report

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10002741	0.83[AMR][1000 genomes]
rs1510666	0.80[AMR][1000 genomes]
rs1510671	0.82[ASN][1000 genomes]
rs1510677	0.80[ASN][1000 genomes]
rs1510678	0.82[ASN][1000 genomes]
rs1510694	0.83[AMR][1000 genomes]
rs17209401	0.85[AMR][1000 genomes]
rs17209459	0.85[AMR][1000 genomes]
rs17272221	0.91[EUR][1000 genomes]
rs17273728	0.91[AMR][1000 genomes]
rs17274168	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17274880	0.85[AMR][1000 genomes]
rs1848932	0.82[ASN][1000 genomes]
rs1877070	0.82[ASN][1000 genomes]
rs1960849	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2048378	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2391124	0.84[AMR][1000 genomes]
rs4631063	0.91[EUR][1000 genomes]
rs4833363	0.84[AMR][1000 genomes]
rs4834145	0.91[EUR][1000 genomes]
rs5011815	0.87[AMR][1000 genomes]
rs56305646	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs57018884	0.87[AMR][1000 genomes]
rs59656578	0.91[EUR][1000 genomes]
rs60444403	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs60662195	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62323479	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62323481	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62323483	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62323516	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6534591	0.82[ASN][1000 genomes]
rs7689620	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879909	chr4:127646765-127792639	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv879910	chr4:127646765-127805466	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv879911	chr4:127646765-127835677	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv428773	chr4:127760014-127913973	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127772800-127792000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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