Variant report

Variant	rs62323483
Chromosome Location	chr4:127794919-127794920
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10002741	0.83[AMR][1000 genomes]
rs10012049	0.82[ASN][1000 genomes]
rs11732135	0.82[ASN][1000 genomes]
rs11735147	0.82[ASN][1000 genomes]
rs13107341	0.82[ASN][1000 genomes]
rs1397432	0.82[ASN][1000 genomes]
rs1510666	0.80[AMR][1000 genomes]
rs1510671	0.85[ASN][1000 genomes]
rs1510677	0.83[ASN][1000 genomes]
rs1510678	0.85[ASN][1000 genomes]
rs1510694	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17209401	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17209459	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17272221	0.91[EUR][1000 genomes]
rs17273728	0.91[AMR][1000 genomes]
rs17274168	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17274880	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1848932	0.85[ASN][1000 genomes]
rs1877070	0.85[ASN][1000 genomes]
rs1960849	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2048378	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2391120	0.82[ASN][1000 genomes]
rs2391124	0.84[AMR][1000 genomes]
rs4373175	0.82[ASN][1000 genomes]
rs4631063	0.91[EUR][1000 genomes]
rs4833361	0.82[ASN][1000 genomes]
rs4833363	0.84[AMR][1000 genomes]
rs4834145	0.91[EUR][1000 genomes]
rs4834157	0.82[ASN][1000 genomes]
rs5011815	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs56305646	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs57018884	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs59656578	0.91[EUR][1000 genomes]
rs60444403	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs60662195	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62323476	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62323479	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62323481	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62323516	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6534591	0.85[ASN][1000 genomes]
rs6534593	0.82[ASN][1000 genomes]
rs6813695	0.82[ASN][1000 genomes]
rs6828035	0.82[ASN][1000 genomes]
rs7654524	0.82[ASN][1000 genomes]
rs7689620	0.85[ASN][1000 genomes]
rs9307592	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879910	chr4:127646765-127805466	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv879911	chr4:127646765-127835677	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv428773	chr4:127760014-127913973	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv830055	chr4:127794875-127993821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127794000-127812200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:127794800-127797000	Weak transcription	Right Atrium	heart

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