Variant report

Variant	rs6828035
Chromosome Location	chr4:127837966-127837967
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:127836489..127839224-chr4:127843135..127845603,3	K562	blood:
2	chr4:127829570..127832511-chr4:127837183..127839221,2	K562	blood:
3	chr4:127815806..127818059-chr4:127836470..127838951,2	K562	blood:
4	chr4:127837336..127840595-chr4:127841845..127844846,5	K562	blood:
5	chr4:127836337..127838086-chr4:127874738..127876500,2	K562	blood:

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10002741	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10012049	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11732135	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11735147	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12500948	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12512293	0.87[ASN][1000 genomes]
rs13107341	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13142376	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs1397432	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1473018	0.80[ASN][1000 genomes]
rs1510666	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1510668	0.90[EUR][1000 genomes]
rs1510671	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1510675	0.90[EUR][1000 genomes]
rs1510677	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1510678	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1510694	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17209401	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17209459	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17210317	0.91[ASN][1000 genomes]
rs17210366	0.91[ASN][1000 genomes]
rs17210835	0.87[ASN][1000 genomes]
rs17273728	0.81[ASN][1000 genomes]
rs17274168	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17274880	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17276043	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17276448	0.89[ASN][1000 genomes]
rs1848932	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1877069	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1877070	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1995903	0.90[EUR][1000 genomes]
rs2048378	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2391117	0.98[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs2391120	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2391121	0.87[ASN][1000 genomes]
rs2391124	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2893204	0.99[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs4345195	0.99[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs4373175	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4391044	0.91[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs4833361	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4833363	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4834157	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4834160	0.91[ASN][1000 genomes]
rs4834165	0.91[CHB][hapmap]
rs5011815	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55926587	0.87[ASN][1000 genomes]
rs56049331	0.91[ASN][1000 genomes]
rs56093833	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56095322	0.80[ASN][1000 genomes]
rs56305646	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57018884	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60300026	0.91[ASN][1000 genomes]
rs60444403	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60662195	0.82[ASN][1000 genomes]
rs62323483	0.82[ASN][1000 genomes]
rs62323516	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62324061	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62324062	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62324067	0.91[ASN][1000 genomes]
rs62324069	0.89[ASN][1000 genomes]
rs62324070	0.87[ASN][1000 genomes]
rs62324071	0.87[ASN][1000 genomes]
rs62324072	0.87[ASN][1000 genomes]
rs62324106	0.80[ASN][1000 genomes]
rs62324478	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6534591	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6534593	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6813695	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6816030	0.90[EUR][1000 genomes]
rs72678030	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7654524	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7657229	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7689620	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7695040	0.97[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs9307592	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428773	chr4:127760014-127913973	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830055	chr4:127794875-127993821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127836600-127838000	Enhancers	Colon Smooth Muscle	Colon
2	chr4:127836800-127838200	Enhancers	Fetal Muscle Leg	muscle
3	chr4:127837000-127838400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr4:127837000-127838400	Enhancers	Adipose Nuclei	Adipose
5	chr4:127837000-127838400	Active TSS	K562	blood
6	chr4:127837000-127838600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:127837000-127838600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr4:127837200-127838000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr4:127837200-127838000	Enhancers	Brain Hippocampus Middle	brain
10	chr4:127837200-127838200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr4:127837200-127838200	Active TSS	Aorta	Aorta
12	chr4:127837200-127838200	Active TSS	Fetal Brain Female	brain
13	chr4:127837200-127838400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr4:127837200-127838400	Enhancers	Fetal Stomach	stomach
15	chr4:127837200-127838400	Flanking Active TSS	NHDF-Ad	bronchial
16	chr4:127837200-127838600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr4:127837400-127838000	Enhancers	Brain Angular Gyrus	brain
18	chr4:127837400-127838000	Enhancers	Rectal Smooth Muscle	rectum
19	chr4:127837400-127838200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr4:127837400-127838400	Flanking Active TSS	Osteobl	bone
21	chr4:127837600-127838000	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr4:127837600-127838000	Active TSS	Duodenum Smooth Muscle	Duodenum
23	chr4:127837600-127838200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
24	chr4:127837600-127838200	Active TSS	Ovary	ovary
25	chr4:127837600-127838200	Flanking Active TSS	NH-A	brain
26	chr4:127837600-127838200	Flanking Active TSS	NHLF	lung
27	chr4:127837600-127838400	Flanking Active TSS	Fetal Lung	lung
28	chr4:127837600-127838400	Enhancers	HMEC	breast
29	chr4:127837600-127838800	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr4:127837800-127838000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr4:127837800-127838000	Flanking Active TSS	Fetal Brain Male	brain
32	chr4:127837800-127838000	Enhancers	Fetal Muscle Trunk	muscle
33	chr4:127837800-127838000	Enhancers	Psoas Muscle	Psoas
34	chr4:127837800-127838000	Flanking Active TSS	HSMM	muscle
35	chr4:127837800-127838200	Active TSS	Brain Anterior Caudate	brain
36	chr4:127837800-127838200	Flanking Active TSS	Brain Germinal Matrix	brain
37	chr4:127837800-127838200	Active TSS	Brain Inferior Temporal Lobe	brain
38	chr4:127837800-127838200	Active TSS	Skeletal Muscle Female	skeletal muscle
39	chr4:127837800-127838200	Active TSS	Stomach Smooth Muscle	stomach
40	chr4:127837800-127838200	Active TSS	HSMMtube	muscle
41	chr4:127837800-127838200	Flanking Active TSS	NHEK	skin
42	chr4:127837800-127838400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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