Variant report

Variant	rs4834165
Chromosome Location	chr4:127952052-127952053
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10012049	0.80[ASN][1000 genomes]
rs1024119	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11732135	0.80[ASN][1000 genomes]
rs11735147	0.80[ASN][1000 genomes]
rs12498487	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12500440	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12500948	0.86[ASN][1000 genomes]
rs12506106	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12506951	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12507172	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12509399	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12510258	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12510561	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12512293	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13107341	0.80[ASN][1000 genomes]
rs13126154	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1397432	0.80[ASN][1000 genomes]
rs1473018	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1480904	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1510664	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1510694	0.80[ASN][1000 genomes]
rs1600664	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17209401	0.80[ASN][1000 genomes]
rs17209459	0.80[ASN][1000 genomes]
rs17210317	0.89[ASN][1000 genomes]
rs17210366	0.89[ASN][1000 genomes]
rs17210835	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17274880	0.80[ASN][1000 genomes]
rs17276043	0.89[ASN][1000 genomes]
rs17276448	0.88[ASN][1000 genomes]
rs17277345	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17277580	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17277733	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17291337	0.82[CHB][hapmap]
rs1912520	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2391120	0.80[ASN][1000 genomes]
rs2391121	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs28719170	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35078448	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4373175	0.80[ASN][1000 genomes]
rs4833361	0.80[ASN][1000 genomes]
rs4833363	0.80[ASN][1000 genomes]
rs4834157	0.80[ASN][1000 genomes]
rs4834160	0.89[ASN][1000 genomes]
rs4834169	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5011815	0.80[ASN][1000 genomes]
rs55926587	0.93[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs56049331	0.89[ASN][1000 genomes]
rs56080449	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56093833	0.89[ASN][1000 genomes]
rs56095322	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56166314	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57018884	0.80[ASN][1000 genomes]
rs60300026	0.89[ASN][1000 genomes]
rs62324061	0.86[ASN][1000 genomes]
rs62324062	0.89[ASN][1000 genomes]
rs62324067	0.89[ASN][1000 genomes]
rs62324069	0.91[ASN][1000 genomes]
rs62324070	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs62324071	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs62324072	0.93[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs62324106	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62324478	0.85[ASN][1000 genomes]
rs62333855	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62333857	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62335480	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62335481	0.89[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs62335482	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6534593	0.80[ASN][1000 genomes]
rs6813695	0.80[ASN][1000 genomes]
rs6828035	0.80[ASN][1000 genomes]
rs72678030	0.89[ASN][1000 genomes]
rs764329	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs764330	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7654524	0.92[CHB][hapmap];0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs9307592	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830055	chr4:127794875-127993821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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