Variant report

Variant	rs17291337
Chromosome Location	chr4:128000462-128000463
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr4:128000397-128000737	K562	blood:	n/a	chr4:128000568-128000577 chr4:128000568-128000577 chr4:128000487-128000500 chr4:128000566-128000577 chr4:128000568-128000579 chr4:128000568-128000577 chr4:128000568-128000577
2	CEBPB	chr4:128000438-128000707	ECC-1	luminal epithelium:	n/a	chr4:128000568-128000577 chr4:128000568-128000577 chr4:128000487-128000500 chr4:128000566-128000577 chr4:128000568-128000579 chr4:128000568-128000577 chr4:128000568-128000577
3	CEBPB	chr4:128000425-128000755	HepG2	liver:	n/a	chr4:128000568-128000577 chr4:128000568-128000577 chr4:128000487-128000500 chr4:128000566-128000577 chr4:128000568-128000579 chr4:128000568-128000577 chr4:128000568-128000577
4	CEBPB	chr4:128000426-128000753	IMR90	lung:	n/a	chr4:128000568-128000577 chr4:128000568-128000577 chr4:128000487-128000500 chr4:128000566-128000577 chr4:128000568-128000579 chr4:128000568-128000577 chr4:128000568-128000577

Variant related genes	Relation type
ENSG00000250945	TF binding region

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs13116630	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1351425	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1351426	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1383520	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1480897	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1480909	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1480910	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17213081	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17278402	0.98[ASN][1000 genomes]
rs17293310	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17293345	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17293359	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34120215	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4550946	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4834165	0.82[CHB][hapmap]
rs55824976	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62333871	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62333879	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62335485	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62335489	0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs62335523	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62335528	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72680008	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7694318	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs976814	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353295	chr4:127994396-128017617	Enhancers Weak transcription ZNF genes & repeats	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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