Variant report

Variant	rs62335485
Chromosome Location	chr4:127992298-127992299
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs13116630	0.96[ASN][1000 genomes]
rs1351425	0.84[ASN][1000 genomes]
rs1351426	0.84[ASN][1000 genomes]
rs1383520	0.96[ASN][1000 genomes]
rs1480909	0.92[ASN][1000 genomes]
rs1480910	0.92[ASN][1000 genomes]
rs17213081	0.96[ASN][1000 genomes]
rs17278402	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17291337	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17293310	0.81[ASN][1000 genomes]
rs17293345	0.81[ASN][1000 genomes]
rs34120215	0.96[ASN][1000 genomes]
rs4550946	0.88[ASN][1000 genomes]
rs55824976	0.92[ASN][1000 genomes]
rs62333871	0.81[ASN][1000 genomes]
rs62335489	0.96[ASN][1000 genomes]
rs62335523	0.90[ASN][1000 genomes]
rs62335528	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830055	chr4:127794875-127993821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127990600-127993400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:127991800-127992400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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